Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003348.1 Length=7879 Score E Sequences producing significant alignments: (Bits) Value seq8046 120 2e-23 >seq8046 Length=7925 Score = 120 bits (132), Expect = 2e-23 Identities = 535/823 (65%), Gaps = 46/823 (6%) Strand=Plus/Plus Query 1773 GAAAAGCATCAGATGGTCCTAGAACCCCCAAAAATAAGACATCCAGCAACAGCCATGTTC 1832 || |||||| ||| || ||||||| |||||| ||||| | || | | ||| ||| | Sbjct 3643 GAGAAGCAT---ATGCTCATAGAACCACCAAAACTAAGAAGTACACCTGCTGCCTTGTAC 3699 Query 1833 TGGTATAAAAGGACAT---TGGCAAACGCTTCAGTGGTAACAGGAGAGACACCAGAATGG 1889 ||||| || ||||| ||| || | | ||| || ||||||||||||||| Sbjct 3700 TGGTACAA---GACATCCATGGGTAATGGGAGTGAGGTCTATGGGGAGACACCAGAATGG 3756 Query 1890 ATACTAAAGCAAGTAAGTTTGCAGGA-ACAA-AT--AGGAGCCGCAGC-CACATTTTCAT 1944 ||| | | || | | |||| ||| || |||| |||| || ||| || Sbjct 3757 ATAGTGAGACAGACACTGAT--AGGACACAGTATGGAGGATGAGCAGTTCAAATTATC-- 3812 Query 1945 TGTCGGCAATGGTGCAGTGGGCATATGATAATGGTCTGGAGGGGGAGAGTGAGATTGCAT 2004 |||| |||||||||| |||||||| ||| | || ||||| | | |||| Sbjct 3813 TGTC----ATGGTGCAGTACGCATATGACCATGACATAACGGACGAGAGCGCACTGGCAT 3868 Query 2005 ATGGATATGCACAGCTAGCAGAAGAGGATACTAATGCAGAAGCCTTTCTCCGTAGCAA-T 2063 || || |||||||| || || | ||| | ||||| | ||| ||||| ||||| | Sbjct 3869 TTGAGTACGCACAGCTGGCGGACGTGGACGCCAATGCGGCAGCATTTCTAAACAGCAACT 3928 Query 2064 GCACAAGCAAAACATGTAAAGGACT--GTG-CAATTATGGTG-AGGCATTACAGGCGTGC 2119 || || || || | |||| ||| ||| |||| ||| || || |||| |||||| Sbjct 3929 GC-CAGGCCAAGTACCTAAAAGACGCGGTGACAAT----GTGCAGACACTACAAGCGTGC 3983 Query 2120 AGAAATGTGCAAAATGAACAT-AGCACAGTGGATTAAGCTCAGGTGTTCCAAGGTGGAGG 2178 ||| | | |||||| || ||| |||||||| || | || | |||| | | Sbjct 3984 AGAGAGGGAACAAATGAGTATGAGC-CAGTGGATCAAATTTAGAGGGAGCAAGATATCAG 4042 Query 2179 GAGAGGGAGATTGGAGACCCATCATGAAGTTTCTAAAGTTTCAAAAAGTAGAGATATTGG 2238 || |||||||||| || || | |||||| ||| | ||| |||||| | || Sbjct 4043 AGGAAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGT 4102 Query 2239 CATTTCTAACA---TTTATGAGACATTTCCTAAGAGGAACCCCTAAGAGAAACTGTATGG 2295 |||| || | |||| || ||||| ||| ||| || |||| || || || | Sbjct 4103 CATTCCTTGCTGCCTTTA--AGTCATTTT-TAAAAGGTGTGCCCAAGAAGAATTGCATAG 4159 Query 2296 TGCTCTTGGGACCCCCAAATACAGGCAAATCATTATTTGGAATGAGCCTAATGCACTTTC 2355 || | | ||||| || ||||||||||||||| || | ||||| || |||| || | Sbjct 4160 TGTTTTATGGACCTGCAGATACAGGCAAATCATATTTCTGCATGAGTCTTTTGCAGTTCC 4219 Query 2356 TAGGCGGTAAAATCATTTCACATGTTAACTCAGGAAGCCATTTTTGGTTGCAGCCTTTGT 2415 |||| || | || ||| ||| || || | ||||| |||||| ||||||| || Sbjct 4220 TAGGTGGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAG 4279 Query 2416 TAGAGTGTAAGGTAGCCATGCTGGATGATGCAACCACAAGCACGTG--GGAC-TACATGG 2472 || ||||| ||| | ||||| ||||| || | | ||| |||| || || | Sbjct 4280 CTGACAGTAAGATAGGACTACTGGACGATGCGACGGC---CCAGTGCTGGACGTATATTG 4336 Query 2473 ATATTTACCTAAGAAACATGTTAGATGGTAACACTGTATGCCTGGATGCAAAACACAAGG 2532 ||| || || || ||| | ||||||| ||| | | | | || ||||| ||| Sbjct 4337 ATACATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGA 4396 Query 2533 CCCCTATGCAGCTTAAGTGCCCACCATTAATTGTAACTACAAA 2575 ||| ||||| | || || || |||||||| |||| || || Sbjct 4397 CCCTGCTGCAGATAAAATGTCCTCCATTAATGATAACAACCAA 4439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25087208464208