Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq532 105 6e-18 seq5929 100 3e-16 seq8564 95.1 1e-14 >seq532 Length=46805 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 ||||||||| | |||||| | || ||||| || ||||||||||| || || | || Sbjct 28756 ACTTTTTCAAATCCTAACGCGACGAACAATCTGTCCGCGACGAATTCGATGTAGTTGCAC 28697 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | ||||||||| ||||| | | || || | || ||| || || |||||| Sbjct 28696 ATGAGCGTACAATTCATTCCTATCAATTGGACTGGTAATGCTTGTGTTAAGAATTCCTTT 28637 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || | || ||||| || || || ||| ||| ||| ||||| |||| Sbjct 28636 TCAATTTCTACAGCATCCATTATAATTGACTTTACGCGTTCAAATGATGGCTTTTGTATA 28577 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | |||||||||||||||||||||||||| |||||||| || Sbjct 28576 ATGTGTTTAAACATTAAACACGCAAAATCGCAATGTAATCC 28536 >seq5929 Length=11024 Score = 100 bits (110), Expect = 3e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 37114 TCTCTCAATAGGTGTGGATTTACAACCTGA--AAATCTCCAGATAATACTCTTCTTGTAT 37171 |||| ||||| || ||||| || | ||| || || || || ||||| | |||| || Sbjct 1423 TCTCGCAATAAATGAGGATTGACGA--TGACGAATTCCCCCGACAATACGCGTCTTACAT 1366 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 | ||||| || || || ||||| ||||| || ||||| | ||| ||||| | || || | Sbjct 1365 AGATATTACTCGTGTACGGTTCGATGGATTCGTTATTCCCTAAGATTTGTGCCGTCGACG 1306 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT 37291 | || ||||| ||||| || | ||| |||||| | ||| || | ||| || | Sbjct 1305 CCGTTGGCATAGGTGCAATCAAAAGCGAATTTCTTACTCCGTGCTTCGCGATTTTCGCCT 1246 Query 37292 TTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAA 37351 | | ||||| ||||| |||||||| ||| || | |||||||||||| || || | Sbjct 1245 TCAATTCATCCCAATTCCATAAATTTGTCGGCTCAACGTGCCACATATCATACTGGAGGA 1186 Query 37352 T 37352 | Sbjct 1185 T 1185 >seq8564 Length=7362 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||| | ||||||||||| || || || ||||| | || || ||| || ||||| || Sbjct 6921 AGTACAGGCGTTAAATAGCGTTGGTGAAGCATGCGTAAAATATCGTTCGGATAAATAGTT 6862 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 ||||||||||| || | || || || | |||||||| | || ||| ||||| | Sbjct 6861 GTATGTTTCTATAACTTTGTCAATGTCGTTCTCATGAATACCAACAGCTACTCTCATCAA 6802 Query 38532 CATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAA 38591 ||| ||||| ||||| |||| ||| || ||| ||| || || || | | || | Sbjct 6801 CATGTGTTGAGGTCTCTCTACTATCTTGCCATTGATTTTCAGCAGGTAGCTTCTCTCAAG 6742 Query 38592 TGTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTAT 38634 ||| || | |||| |||| |||| ||| |||||| ||||||| Sbjct 6741 TGTCTTAAAACCAATATAATTATAACTGA--AATCTCGATCGTAT 6699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468309255165760