Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5929 102 1e-16 seq2380 100 4e-16 seq532 84.2 3e-11 >seq5929 Length=11024 Score = 102 bits (112), Expect = 1e-16 Identities = 217/318 (68%), Gaps = 12/318 (4%) Strand=Plus/Minus Query 65582 ACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAAT 65641 ||| |||||||||||||| | |||||| ||| | || ||| |||||| |||| | Sbjct 813 ACCAATAGGTCTATGTCTTTGATTAGAAGTTTTCGTCTCCAAAATGGGATAAAAATTGAC 754 Query 65642 ATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAG 65698 || |||| ||||| | ||| | |||| ||| |||| | || || ||||| Sbjct 753 GTCGATAACTTTATCCAAATTACGAGTGACGATT--TTTG-CAACTGTTTTAAGTTTATC 697 Query 65699 AAAATCAAA----TCGCTCATC-TATT-ACAAACATGTTCAATGCAACAGATGCCAGATT 65752 |||||| || | | | || |||| |||||||| || | |||| |||||||||||| Sbjct 696 AAAATCGAAAGTCTTGTTATTCGTATTCACAAACATATTGACAGCAATAGATGCCAGATT 637 Query 65753 ACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACA 65812 ||| || || || || || | | ||||| || | || ||||| | ||| || || Sbjct 636 ACACACAGCAACTTCCCCAGGGCCAGAGTATTGAATAACTTCGGTGCACAAATTGCTGCA 577 Query 65813 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 65872 ||||| || || | | || |||||| ||| || || |||||| ||||| || Sbjct 576 TTTGATTGTACCAATGTGCTGATGATTAGATTTTCGATTGCAGTGATCCTTGTAAAGCAT 517 Query 65873 GAATGGAGTACCAGTTTC 65890 | | ||||| |||||||| Sbjct 516 GTAAGGAGTTCCAGTTTC 499 >seq2380 Length=22946 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||||||| | || ||||||||||| || ||||| |||| ||| |||||||| |||| | Sbjct 21293 CACTAAAAATCTTCTTTGTTTCTTTATGCAGATTAGATATGGCAATTCTAGCTGCTAAAG 21234 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || ||||| | |||||| | | | | ||||| ||||| || || | |||||| Sbjct 21233 TTGCGTAATCTGCATGTTGATTGATCATACTTGCTGCAATTTCAGCCGCTAAGTTGTCCA 21174 Query 66919 ATTCTACCGTTGTTACTCCA 66938 |||| || |||||||||||| Sbjct 21173 ATTCAACTGTTGTTACTCCA 21154 >seq532 Length=46805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 |||||| || |||||||| ||||| ||||| || || || ||||||||||| | || || Sbjct 27903 ATACATCTCAGAATGAATATTTTCTATGGCGATCTGGAAGCCGTAGAAACAACGTGCTTC 27844 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 | || | || ||| || |||| || | ||| ||||| || ||||| || Sbjct 27843 CGCGATTTTCACCTCTTGACTGAATCTCTCAATCAGATTCTCATTAACGATTCCATCGGA 27784 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 36611 || ||||| |||||||| ||||| ||||| ||| |||||| Sbjct 27783 AGCAGCAAAGAACGCCAAGACATGAGAGATAAAGTATCTTTCGT 27740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657870007603360