Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2779 136 4e-27 seq1592 116 4e-21 seq12857 93.3 4e-14 >seq2779 Length=20704 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||||||||||| ||||| || |||||||| ||||||||| | || || Sbjct 8161 CGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCA 8220 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| ||||| ||| | || |||||||||||||||||||| || ||||||||| Sbjct 8221 TCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTG 8280 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||||| ||||| | || | ||||| | | || || |||| || | Sbjct 8281 TCCTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATG 8340 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || | ||||| || || || ||||| Sbjct 8341 GTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 >seq1592 Length=29089 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| ||||| | || |||||||| |||||||| || ||| Sbjct 415 CCACCACGTAGACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAA 474 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| |||||||| |||||| |||||| | ||||||||| || || Sbjct 475 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGG 534 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| |||| | ||| | | || | ||||| | | || || Sbjct 535 ATGCCTTCTTTATC-CTGAATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAAC 593 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || ||||| ||||| || || || ||||| Sbjct 594 CTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCAT 641 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||||||||| || | || || || |||||||| || |||||| || |||| | Sbjct 199 CGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGTCCG 258 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || || | |||| | |||||||| ||||| |||||||||||| Sbjct 259 TCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTG 318 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | ||| | | || | || || | | ||| || || | || | Sbjct 319 TC-TTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAAT 377 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || || ||||| ||||| ||||| ||||||||| Sbjct 378 AGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCATA 414 >seq12857 Length=4317 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 || |||||| || | ||||| || || ||||| || ||||| | |||| || Sbjct 3832 CAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATC 3891 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || ||||| |||||| | |||| | || ||||| ||||| |||||||||||||| Sbjct 3892 TTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATGCCTTCTTTGTC 3951 Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| |||| | ||| | | ||| | ||| |||| | ||| || || | || | | Sbjct 3952 -CTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGACTTCCAATGTGATGG 4010 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||||| | || || ||||| || |||||| Sbjct 4011 TCTTACCGGTGAGAGTCTTGACGAAAATCTGCATA 4045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495835785756800