Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2380 100 4e-16 seq5929 98.7 1e-15 seq532 98.7 1e-15 seq2146 89.7 7e-13 >seq2380 Length=22946 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| | || |||||||| || || ||||| |||| ||| ||||| || |||||| Sbjct 21293 CACTAAAAATCTTCTTTGTTTCTTTATGCAGATTAGATATGGCAATTCTAGCTGCTAAAG 21234 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | || ||||||| |||||| | | | | ||||| ||||| || || | |||||| Sbjct 21233 TTGCGTAATCTGCATGTTGATTGATCATACTTGCTGCAATTTCAGCCGCTAAGTTGTCCA 21174 Query 80798 ATTCTACCGTTGTTACTCCA 80817 |||| || |||||||||||| Sbjct 21173 ATTCAACTGTTGTTACTCCA 21154 >seq5929 Length=11024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/318 (68%), Gaps = 12/318 (4%) Strand=Plus/Minus Query 79461 ACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAAT 79520 ||| |||||||||||||| | ||||||| ||| | || ||| |||||| |||| | Sbjct 813 ACCAATAGGTCTATGTCTTTGATTAGAAGTTTTCGTCTCCAAAATGGGATAAAAATTGAC 754 Query 79521 ATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGAG 79577 || |||| ||||| | ||| | |||| ||| |||| | || || ||||| Sbjct 753 GTCGATAACTTTATCCAAATTACGAGTGACGATT--TTTG-CAACTGTTTTAAGTTTATC 697 Query 79578 AAAATCAAA----TCGTCCATC-TATT-ACAAACATGTTCAACGCGACAGATGCCAGATT 79631 |||||| || | || || |||| |||||||| || | || | |||||||||||| Sbjct 696 AAAATCGAAAGTCTTGTTATTCGTATTCACAAACATATTGACAGCAATAGATGCCAGATT 637 Query 79632 ACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACA 79691 ||| || || || || || | | ||||| || | ||| ||||| | || || || Sbjct 636 ACACACAGCAACTTCCCCAGGGCCAGAGTATTGAATAACTTCGGTGCACAAATTGCTGCA 577 Query 79692 CTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 79751 || || || || | | || |||||| ||| || || |||||| ||||| || Sbjct 576 TTTGATTGTACCAATGTGCTGATGATTAGATTTTCGATTGCAGTGATCCTTGTAAAGCAT 517 Query 79752 GAACGGAGTACCAGTTTC 79769 | | ||||| |||||||| Sbjct 516 GTAAGGAGTTCCAGTTTC 499 Score = 89.7 bits (98), Expect = 7e-13 Identities = 189/280 (68%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 |||| || |||| | |||||| ||| ||||||| ||| | | ||| ||||| Sbjct 1462 TTCTGCATGTCTTTGTCCCATAAACCTCTGGCGGTTAAGTCTCGCAATAAATGAGGATTG 1403 Query 79057 ACTACTTGA--AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTT 79114 || | ||| ||||| || |||||||| | | || |||||||| || || |||| Sbjct 1402 ACGA--TGACGAATTCCCCCGACAATACGCGTCTTACATAGATATTACTCGTGTACGGTT 1345 Query 79115 CCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCA 79174 | | ||||| ||||| || || ||||| || || || ||||||||||||||||| | || Sbjct 1344 CGATGGATTCGTTATTCCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGGTGCAATCA 1285 Query 79175 ATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAA 79234 | | |||||| | |||| |||||| | || | ||||||| ||| | Sbjct 1284 AAAGCGAATTTCTTACTCCGTGCTTCGCGATTTTCGCCTTCAATTCATCCCAATTCCATA 1225 Query 79235 GATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 || | ||| |||| | ||| | |||||| || || || Sbjct 1224 AATTTGTCGGCTCAACGTGCCACATATCATACTGGAGGAT 1185 >seq532 Length=46805 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 50226 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 50283 || |||||| ||||| | || || |||||| || |||||||| ||||| ||||| ||| Sbjct 27927 AATATAAGTTTCGATGAGTAAGGA--ATACATCTCAGAATGAATATTTTCTATGGCGATC 27870 Query 50284 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCT 50343 || || ||||||||||| | || || | || | ||| ||| || |||| ||| Sbjct 27869 TGGAAGCCGTAGAAACAACGTGCTTCCGCGATTTTCACCTCTTGACTGAATCTCTCAATC 27810 Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 | ||| ||||| || ||||| || || ||||| |||||||| ||||| ||||| Sbjct 27809 AGATTCTCATTAACGATTCCATCGGAAGCAGCAAAGAACGCCAAGACATGAGAGATAAAG 27750 Query 50404 TGTTTTTCGT 50413 | | |||||| Sbjct 27749 TATCTTTCGT 27740 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 |||||| || | ||||||||||| ||| | |||||||| ||||| | ||||| ||| | Sbjct 27590 TACTTCCTCTATGGTCCAAAATGACGCCACAGCCTTTTTGTACATGTCCCAGACATCAGG 27531 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGG 50549 |||||| || |||||||| ||||| | |||||| Sbjct 27530 ATATTGAATGGGGAAAATTACAAAGCGATTTGG 27498 >seq2146 Length=24533 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 |||| |||||||| |||| || |||| ||| ||||| || |||| || || ||| Sbjct 24277 TATGACTCATAAGGACCTTTCTCGGTAGCTATTTCGCAACTGGCTTCTAGAGCACCATAA 24336 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 |||| || || ||||| | ||||||| || |||||| ||| |||||||| || Sbjct 24337 TAAAGAGTCTCAAAAATTTGAATATTGAGTTCACTAGCTTCTTTGCTTTCAAATGGGTAT 24396 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | | ||||| || |||||||||||||| |||| ||||| Sbjct 24397 CTCATTAAGATAAATGCATCTGCTAATCCTTGTACACTGATACC 24440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717938360438560