Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5929 100 4e-16 seq532 96.9 5e-15 seq2380 95.1 2e-14 >seq5929 Length=11024 Score = 100 bits (110), Expect = 4e-16 Identities = 261/394 (66%), Gaps = 12/394 (3%) Strand=Plus/Minus Query 71544 ACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAAT 71603 ||| |||||||| ||||| | ||||||| ||| | || ||| |||||| |||| | Sbjct 813 ACCAATAGGTCTATGTCTTTGATTAGAAGTTTTCGTCTCCAAAATGGGATAAAAATTGAC 754 Query 71604 ATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAG 71660 || |||| ||||| | ||| | |||| ||| |||| | || || ||||| Sbjct 753 GTCGATAACTTTATCCAAATTACGAGTGACGATT--TTTG-CAACTGTTTTAAGTTTATC 697 Query 71661 AAAATCAAATCTCCCATC-----TATT-ACAAACACGTTCAAGGCAACAGATGCCAGATT 71714 |||||| || || | |||| ||||||| || | |||| |||||||||||| Sbjct 696 AAAATCGAAAGTCTTGTTATTCGTATTCACAAACATATTGACAGCAATAGATGCCAGATT 637 Query 71715 ACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACA 71774 ||| || || || || || | | ||||| |||| ||| ||||| | ||| || || Sbjct 636 ACACACAGCAACTTCCCCAGGGCCAGAGTATTGAATAACTTCGGTGCACAAATTGCTGCA 577 Query 71775 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 71834 ||||| || || | | || |||||| ||| || || |||||| ||||| || Sbjct 576 TTTGATTGTACCAATGTGCTGATGATTAGATTTTCGATTGCAGTGATCCTTGTAAAGCAT 517 Query 71835 AAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT 71894 | ||||| |||||||| | || ||| | ||| || ||| || | | |||| Sbjct 516 GTAAGGAGTTCCAGTTTCTACTTGCGATCTGAGAATGGCAACCCACACAGCCCTGGCCTC 457 Query 71895 TATTATATTCTTGTATCTCTTTTCTCTTTCGTAT 71928 || | ||||| || | |||| |||||||| Sbjct 456 TACTTGTTTCTTATAGCGACCTTCTTTTTCGTAT 423 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || |||| | |||||| ||| ||||||| ||| | | ||||||||| || | Sbjct 1456 ATGTCTTTGTCCCATAAACCTCTGGCGGTTAAGTCTCGCAATAAATGAGGATTGACGA-- 1399 Query 71146 TGA--AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTG 71203 ||| ||||| || |||||||| | | || |||||||| || |||||||| | | Sbjct 1398 TGACGAATTCCCCCGACAATACGCGTCTTACATAGATATTACTCGTGTACGGTTCGATGG 1339 Query 71204 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGAC 71263 | || ||||| || || ||||| || || || || || ||||||||||| | ||| || Sbjct 1338 ATTCGTTATTCCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGGTGCAATCAAAAGCG 1279 Query 71264 TATTTCT 71270 |||||| Sbjct 1278 AATTTCT 1272 >seq532 Length=46805 Score = 96.9 bits (106), Expect = 5e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 |||||| |||| ||||||||||| || | |||||||| ||||| | ||||| |||| | Sbjct 27590 TACTTCCTCTATGGTCCAAAATGACGCCACAGCCTTTTTGTACATGTCCCAGACATCAGG 27531 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 ||||||||| |||||||| ||||| | |||||| Sbjct 27530 ATATTGAATGGGGAAAATTACAAAGCGATTTGG 27498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 42331 AACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATC 42388 || ||| || ||||| | || || |||||| || |||||||| ||||| ||||| ||| Sbjct 27927 AATATAAGTTTCGATGAGTAAGGA--ATACATCTCAGAATGAATATTTTCTATGGCGATC 27870 Query 42389 TGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCT 42448 || || ||||||||||| | || || | | | || ||| || |||| ||| Sbjct 27869 TGGAAGCCGTAGAAACAACGTGCTTCCGCGATTTTCACCTCTTGACTGAATCTCTCAATC 27810 Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 | ||| || || || ||||| || || ||||| |||||||| ||||| ||||| Sbjct 27809 AGATTCTCATTAACGATTCCATCGGAAGCAGCAAAGAACGCCAAGACATGAGAGATAAAG 27750 Query 42509 TATTTTTCGTC 42519 ||| ||||||| Sbjct 27749 TATCTTTCGTC 27739 >seq2380 Length=22946 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| | || |||||||| || || ||||| |||| ||| ||||| || |||| | Sbjct 21293 CACTAAAAATCTTCTTTGTTTCTTTATGCAGATTAGATATGGCAATTCTAGCTGCTAAAG 21234 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | || ||||||| |||||| | | | | ||||| ||||| || || | |||||| Sbjct 21233 TTGCGTAATCTGCATGTTGATTGATCATACTTGCTGCAATTTCAGCCGCTAAGTTGTCCA 21174 Query 72881 ATTCTACCGTTGTTACTCCA 72900 |||| || |||||||||||| Sbjct 21173 ATTCAACTGTTGTTACTCCA 21154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670830442411040