Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2779 140 3e-28 seq1592 123 3e-23 seq12857 109 6e-19 >seq2779 Length=20704 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||||||||| |||| ||||||||| ||||| || || |||||| Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAA 8208 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| || || ||||| ||| | || |||||||||||||||||||| Sbjct 8209 AGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGA 8268 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||||| | || | ||||| | | ||| ||| Sbjct 8269 ATTCCTTCTTTGTCCTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACT 8328 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || ||||| || | ||||| || || || ||||| Sbjct 8329 TCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 >seq1592 Length=29089 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||||||||||| | || ||||| ||||| || ||||||||| | Sbjct 187 CCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAC 246 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || || || || || || | |||| | |||||||| ||||| Sbjct 247 AAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGG 306 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| |||||| ||| | | || | ||| || | | |||||| Sbjct 307 ATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACT 366 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 367 TCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCATA 414 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| || || | || || ||||| || |||||||| ||| Sbjct 415 CCACCACGTAGACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAA 474 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| || ||||| |||||| |||||| | ||||||||| || || Sbjct 475 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGG 534 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||||||||| || |||||| ||| | | || | |||||| | | ||| || Sbjct 535 ATGCCTTCTTTATCCTGAATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAACC 594 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| ||||| || || || ||||| Sbjct 595 TCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCAT 641 >seq12857 Length=4317 Score = 109 bits (120), Expect = 6e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 142951 GACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTA 143010 ||||| || |||| | ||| | || | ||| | |||||||||||| || || || || Sbjct 3583 GACATTTCCGCCTCTAAGACGGAGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATA 3642 Query 143011 ATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 143070 ||| || || | ||| ||||| || || || || | ||||| | ||||||||| Sbjct 3643 ATCTGACAAAGTACGTCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATC 3702 Query 143071 GGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGG 143130 ||||| ||||| |||||||| |||||| |||| | || | ||| |||| | Sbjct 3703 AGGAGGAATGCCCTCTTTGTCTTGAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGC 3762 Query 143131 TTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 3763 CTCTACCTCCAAAGTGATAGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCATA 3817 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 || ||||||||| | |||||||| || || || |||||||| | |||| || Sbjct 3832 CAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATC 3891 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| |||||||| |||||| | |||| | || ||||| ||||| |||||||||||||| Sbjct 3892 TTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATGCCTTCTTTGTC 3951 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 |||||| ||| | | ||| | || || | | || ||||| | || | || Sbjct 3952 CTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGACTTCCAATGTGATGGT 4011 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| ||||| | || || ||||| || |||||| Sbjct 4012 CTTACCGGTGAGAGTCTTGACGAAAATCTGCATA 4045 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||||||||| | || ||||| || || || |||||||| Sbjct 4046 CCACCACGTAGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAGAA 4105 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||||||||||| || ||| |||||| | |||||||| ||||| Sbjct 4106 AGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGG 4165 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| ||| | | || | ||| || | | || ||| Sbjct 4166 ATACCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGACT 4225 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || ||||| | || || ||||| || |||||| Sbjct 4226 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCATA 4273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506781148025280