Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2779 147 2e-30 seq1592 105 5e-18 seq12857 98.7 7e-16 seq121 91.5 1e-13 >seq2779 Length=20704 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| || || || || ||||||||| ||| |||| | ||||| | ||| Sbjct 8400 ATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCAAGTTG 8459 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| ||| || || || |||||||| |||||||| ||||| Sbjct 8460 TTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTT 8519 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| ||||||||||||| | ||| || || | ||| |||||||| ||||| Sbjct 8520 GGCCTTCACATTTTCTATGGTATCTGAAGCTTCAACTTCAAGGGTGATGGTTTTGCCTGT 8579 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||||||| || ||||| Sbjct 8580 GAGAGTCTTTACAAAGATCTGCAT 8603 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 |||||||| ||||| || || || ||||| || || |||||| ||| |||| | ||| Sbjct 8164 AAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCATCT 8223 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-C 15270 || | || || || || | || | |||||| || ||| |||||||||||||||| | Sbjct 8224 TCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTGTCC 8283 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 | ||||||| ||||| | || ||||| || | ||| || || | |||||||| Sbjct 8284 TGGATTTTTGCT-TTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATGGT 8342 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| ||||| |||||||| ||||| || ||||| Sbjct 8343 TTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 >seq1592 Length=29089 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||||||||| || ||||| || ||||| || ||||||||| | | | |||| Sbjct 202 AAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGTCCGTCC 261 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||| ||| | ||||| | || || || || || ||||||||||| Sbjct 262 TCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCT 321 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| || ||| | || || ||||| | ||||| || || ||||| ||| Sbjct 322 TGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAATAGTT 381 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| || |||||||||||| Sbjct 382 TTTCCCGTCAAGGTTTTGACGAAAATTTGCATA 414 >seq12857 Length=4317 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG----T 15209 ||||||||| || || || || || || || |||||||| |||| | ||| | Sbjct 3835 AACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATC----AGAAAGCGTGCGACCAT 3890 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | |||||| ||||| | ||||| | ||||| || || || |||||||||| Sbjct 3891 CTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATGCCTTCTTTGT 3950 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | ||||||| || ||| |||| || |||||| || || || || || |||| Sbjct 3951 CCTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGACTTCCAATGTGATGG 4010 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || ||||| || || ||||| |||||| Sbjct 4011 TCTTACCGGTGAGAGTCTTGACGAAAATCTGCATA 4045 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || || || ||||| | | | | |||| || | || Sbjct 3613 ATGTAGTGTAGATTCTTTCTGAATATTATAATCTGACAAAGTACGTCCGTCCTCGAGCTG 3672 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| ||| | |||| | ||| || || ||||| || |||||||| |||||| Sbjct 3673 CTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGAATGCCCTCTTTGTCTTGAATTTT 3732 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||||||| | || || ||||| | ||||| || || || || ||||| ||||| Sbjct 3733 AGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACCTCCAAAGTGATAGTTTTTCCTGT 3792 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || |||||| || |||||||||||| Sbjct 3793 CAAAGTTTTGACGAAAATTTGCATA 3817 >seq121 Length=74473 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| ||||| ||||| ||| | | | ||||| | ||||| ||||| | | Sbjct 8121 CTTTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAGCAAAGA 8180 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 | | || || || || ||||||||| ||||| || ||| ||| || ||| ||| Sbjct 8181 TAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTT 8240 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | |||||||| |||||| || | |||||||||||||| || || ||||| || | Sbjct 8241 CGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTGACGA 8300 Query 15354 AAATTTGCAT 15363 |||| ||||| Sbjct 8301 AAATCTGCAT 8310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362016744972564