Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004765.1 Length=8300 Score E Sequences producing significant alignments: (Bits) Value seq8046 122 5e-24 >seq8046 Length=7925 Score = 122 bits (134), Expect = 5e-24 Identities = 439/682 (64%), Gaps = 12/682 (2%) Strand=Plus/Plus Query 1774 TATCAGCCATGGTTCAGTGGGCGTATGATAACGATCTATATGAGGAGTGTGAAATTGCTT 1833 |||| | |||||| |||| || ||||| | || || || ||| | | | | || | Sbjct 3809 TATCTGTCATGGTGCAGTACGCATATGACCATGACATAACGGACGAGAGCGCACTGGCAT 3868 Query 1834 ATCAGTACGCTTCTCTTGCTGACACAGAGGAAAATGCAGCAGCATTCTTGAAATCAAACA 1893 | ||||||| || || ||| || | ||||| |||||||| | || ||| Sbjct 3869 TTGAGTACGCACAGCTGGCGGACGTGGACGCCAATGCGGCAGCATTTCTAAACAGCAACT 3928 Query 1894 GCCAGGCCAAGCATGTCAGAGATTGTGCTACAATGTGCAGATATTATAAAAGGGCAGAAA 1953 ||||||||||| | | | ||| | |||||||||||| | || || | ||||| | Sbjct 3929 GCCAGGCCAAGTACCTAAAAGACGCGGTGACAATGTGCAGACACTACAAGCGTGCAGAGA 3988 Query 1954 TGCAAAGGATGACCATGTCAGAGTGGATT---TCTAGGCAGTGTAAAAGTGCACAGGGAG 2010 | || |||| ||| ||||||| | ||| | | || | || ||| || Sbjct 3989 GGGAACAAATGAGTATGAGCCAGTGGATCAAATTTAGAGGGAGCAAGATATCAGAGGAAG 4048 Query 2011 ACGGAGACTGGAAAGACATTGTAAAATTTTTAAGATACCAAGACCTAGAGTTTACATCTT 2070 |||| ||||| || ||||| |||||||| | || | ||||||| || | Sbjct 4049 ---GAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCAT 4105 Query 2071 TTTTGAGTGCATTTACAAAATTTTTGAAGGGTGTCCNNNNNNNNAATTGTCTAGTCTTCT 2130 | | ||| |||| |||||| || ||||| | ||||| |||| || | Sbjct 4106 TCCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTT 4165 Query 2131 GGGGACCTCCCAATACTGGGAAATCGATGTTT-TGCATGAGCCTCATGCAGTTTCTGAAG 2189 |||||| | |||| || ||||| || ||| |||||||| || ||||||| || Sbjct 4166 ATGGACCTGCAGATACAGGCAAATC-ATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGT 4224 Query 2190 GGAAAGGTGCTCTCTTTTGTGAATAGCAAAAGTCAGTTTTGGCTGCAGCCTTTAGCAGAT 2249 || || | || | || ||| || || || |||||||||||||| ||||| || Sbjct 4225 GGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGAC 4284 Query 2250 GCAAAAGTAGCATTGCTGGATGATGCCACTGCCCCCTGCTGGACTTATTTTGACACCT-T 2308 || ||| | | ||||| ||||| || |||| |||||||| ||| |||| || | | Sbjct 4285 AGTAAGATAGGACTACTGGACGATGCGACGGCCCAGTGCTGGACGTATATTGATACATAT 4344 Query 2309 CTTAAGAAATGCT-CTGGATGGCAATCCAATTTGTATAGATGCAAAACACAAAGCCCCCT 2367 |||| ||| || || ||||| || || | ||||||| ||||| || ||| Sbjct 4345 CTTAGGAA--CCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTGC 4402 Query 2368 ATCAGGTGAAGTGTCCACCTCTGATGGTGACCACCAATGTAGATGTAATAGGGGATTCGC 2427 ||| | || ||||| || | ||| | || ||||| || || ||| ||| Sbjct 4403 TGCAGATAAAATGTCCTCCATTAATGATAACAACCAACATAAATCCTCTAGAGGAGGACA 4462 Query 2428 GCTGGCCATATTTGCGCAGCAG 2449 | ||| |||||||||||||| Sbjct 4463 GATGGAAGTATTTGCGCAGCAG 4484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26433850662784