Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1592 123 2e-23 seq12857 107 2e-18 seq2779 100 2e-16 >seq1592 Length=29089 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || || |||||||||||||||||||| | || || ||||||||||||| Sbjct 211 TGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGC 270 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || ||||| |||| | ||||||||||||| || | ||| |||||||| |||||| Sbjct 271 TTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTGAATTTTG 330 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | ||| ||||| || ||| ||| | ||||| ||||| || || Sbjct 331 GCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAATAGTTTTTCCCGTC 390 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 || |||||||| ||||||||||| Sbjct 391 AAGGTTTTGACGAAAATTTGCAT 413 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 18857 TGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGT 18916 |||||||||||||| | || || ||||||||||||| || ||||| |||| | | Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 18917 CTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACA 18976 |||||||||||| || | ||| |||||||| |||||| ||| || | | | Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATC 120 Query 18977 GTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATT 19036 ||||| | ||| ||| | || ||||||||||| || | ||| ||||| ||||| Sbjct 121 GTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATC 180 Query 19037 TGCAT 19041 ||||| Sbjct 181 TGCAT 185 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || ||||| || ||||| ||||| || | | || | |||| || Sbjct 433 ACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCA 492 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | || | ||| |||||||| ||| | ||| ||||| || | Sbjct 493 AGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCCTGA 552 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| ||| || | ||| || || || || || | || ||||| || Sbjct 553 ATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGATGGTCTTT 612 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || ||||||||||| || |||||| Sbjct 613 CCCGTCAAGGTTTTGACAAAGATCTGCATT 642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || || || | |||| || | || || ||||| |||||||||||||| | Sbjct 641 TTCCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGG 700 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || |||| || |||||||| || || |||| | | |||||| || | Sbjct 701 ACAAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTG 760 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC-TCC 18991 | | ||||||||||| ||| ||| ||||| | ||| ||| || |||| || Sbjct 761 GAATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTC-AGAGGCTTCA 819 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || ||||| || ||||| || || |||||||| ||||| Sbjct 820 ACTTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCAT 869 >seq12857 Length=4317 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || || |||||||| ||||| | || || ||||||| ||||| || ||| Sbjct 3620 GTAGATTCTTTCTGAATATTATAATCTGACAAAGTACGTCCGTCCTCGAGCTGCTTGCCC 3679 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| ||||| |||||||| || | |||||||||||| |||||| ||| Sbjct 3680 GCGAAAATCAGTCTTTGCTGATCAGGAGGAATGCCCTCTTTGTCTTGAATTTTAGCCTTT 3739 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||||| || ||| || | || || ||||| ||||| |||||| Sbjct 3740 ACATTCTCGATCGTATCCGAAGCCTCTACCTCCAAAGTGATAGTTTTTCCTGTCAAAGTT 3799 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||||||||| Sbjct 3800 TTGACGAAAATTTGCAT 3816 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||| ||||| |||||||||||||| | | || | || || || ||| Sbjct 3842 TGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCTTCAAGTTGT 3901 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||| | |||||| |||||| || | ||| |||||||| |||||| Sbjct 3902 TTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTG 3961 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | |||||| | ||| ||| | || ||||| ||||| || Sbjct 3962 GCTTTGACATTTTCAATTGTATCGGATGCCTCGACTTCCAATGTGATGGTCTTACCGGTG 4021 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | ||| ||||| ||||| ||||| Sbjct 4022 AGAGTCTTGACGAAAATCTGCAT 4044 >seq2779 Length=20704 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| |||||||||||||| ||||| | | ||| || | || |||||||| ||||| Sbjct 8179 GTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCATCTTCCAGCTGCTTACCG 8238 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || | |||||||| || | || |||||||| ||||| |||| Sbjct 8239 GCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTT 8298 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || || || || ||| | ||||||||||| ||||| | |||| Sbjct 8299 ACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATGGTTTTGCCTGTAAGAGTT 8358 Query 19025 TTGACAAAAATTTGCATT 19042 || ||||| || |||||| Sbjct 8359 TTCACAAAGATCTGCATT 8376 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| || | ||| || ||||| || ||||||||||| | | ||| || | || || Sbjct 8395 ACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCA 8454 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || || |||| || | |||||||||| ||| | ||||||||||| Sbjct 8455 AGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGG 8514 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | | ||||| || || ||| | ||| |||||||| Sbjct 8515 ATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCAACTTCAAGGGTGATGGTTTTG 8574 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| | ||| || ||||| || |||||| Sbjct 8575 CCTGTGAGAGTCTTTACAAAGATCTGCATT 8604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414386843888776