Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq19229 672 0.0 seq31064 269 1e-67 seq13651 145 3e-30 seq35391 93.3 2e-14 >seq19229 Length=2166 Score = 672 bits (744), Expect = 0.0 Identities = 820/1102 (74%), Gaps = 30/1102 (3%) Strand=Plus/Plus Query 56223 CCACAATGCGAAAGTGAACCGCCCCGGTTTTCCTGGAGAGTGTTTTATCTGTGAACTCAG 56282 ||| | ||| ||| ||||||||||||||||| |||||||||||| || | | ||||| Sbjct 406 CCAAAGTGC-AAACTGAACCGCCCCGGTTTTTTTGGAGAGTGTTTAGTCCGGAAGCTCAG 464 Query 56283 GCTGCCAGATCATCGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGA 56342 ||||||||||||| ||| ||| |||||||||||||||||| |||||| |||| || Sbjct 465 GCTGCCAGATCATTATTTGTACTGGTAGCATAATAAGCTTTTTCGGCTTCTACCGGCGGT 524 Query 56343 GTATGGCCCAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTG 56402 | || || |||| | |||| || | ||||||||| ||||||||||||||| ||||| Sbjct 525 ATGTGTCCTAGCCGTTCCAGTAACCTTCGATTGTTGAACCAGTCCACCCACGCCAGTGTC 584 Query 56403 GCCAGTTCCACTTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAA 56462 || || |||||||| || ||||||||||||| |||||||| || || |||||||||||| Sbjct 585 GCAAGCTCCACTTCCGCGTGGTTTTTCCAGCTTTTACGGTGGATCACTTCCGCTTTGTAA 644 Query 56463 AGACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGAT 56522 || |||||||| ||||| |||| || || || || ||||||||||| || ||||| || Sbjct 645 AGGCCATTGATACTCTCGGCCAGGGCATTATCGTAAGAGTCGCCTGTGCTGCCTGTCGAC 704 Query 56523 GCCAGTA-ATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCC 56581 |||| | |||| | || | | |||| || || ||||||||||| || || ||||| Sbjct 705 GCCAACAGCTCCGAC-TCCTGCAACCGCTGGGTGTACGCCAGTGACACGTATTGGGAGCC 763 Query 56582 TTTATCGCTGTGATGGATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGC 56641 || || ||||||||| || || | |||||||| | ||||| || || || ||||| Sbjct 764 CTTGTCCGAGTGATGGATTGTACCTGTGGGACGACGAGACCACAGAGCTTGTTCTAGCGC 823 Query 56642 ATCCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGAT-GTATCCGG 56700 |||||||||||| | | || ||| ||||||||||||| ||| || ||||| || | || Sbjct 824 ATCCAGCACGAACCTTGCTTACATCGACGATGAGACCCTCCAGCCAACGATCGTGT-TGG 882 Query 56701 CAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAA 56760 | |||||||| ||||| ||||||||||| ||||| |||||| ||||||||||| |||| Sbjct 883 CGAACACATCGATGATGAACGCCACATACGCGAAGGCCTGCCGGGTGCTGACGTACGTAA 942 Query 56761 AATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGC 56820 |||| || ||| ||||| | || |||||||||||||||||||||||||| | || Sbjct 943 AATCTGCACACCAAAGCTGATTGGGACGTTCTGCCACGAACTGACGGTTTACCAGATCCG 1002 Query 56821 CTGCGGCAACGGCTTTCCGGCTGA---TGGTCGTACGGACCTTTTTACCCCGGAGAACAC 56877 | |||| | | ||| || | || ||||| | ||| ||| || ||||| || | Sbjct 1003 CAGCGGTCGCTGTTTTGCGACCGACTGTGGTCTTGATGAC---TTTGCCGCGGAGTACGC 1059 Query 56878 CGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTT 56937 | ||| || || | || ||||| | || ||||| | ||| || || | || | Sbjct 1060 CCCTAAGACCGATTATTTTCAGCAGACGCTCAACCGTACACCGGGCAACGCTAAAACCCT 1119 Query 56938 CCCGTAACAACTGACGCCAGACTTTACGCACACCGTACAC-CTGATGATTTTCATCGTAT 56996 | || | ||||||||||||||||| ||| | || || || ||| | |||||| ||||| Sbjct 1120 CGCGAAGTAACTGACGCCAGACTTTTCGCGCTCCATAGACACTG-TAATTTTCTTCGTAA 1178 Query 56997 ACGCGCTGTATCT-CTCTCTTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATC 57055 ||||| | ||||| || || || | || | || | || |||| ||| || Sbjct 1179 ACGCGTTTTATCTCCTGGCTGATTTGAG-CATCATACTTTTCTCGTTGGCTGCATTTTTC 1237 Query 57056 CGGAT---GATGTCGCTGTTGCTGACAATGGTAATACGTTGACGGGGCAATATGCAGTTC 57112 |||| | || || ||||| || || ||| || || |||||||||||| ||| || Sbjct 1238 AGGATGTAGCTGGCGTTGTTGATGCCA---GTAGTATGTCTACGGGGCAATATCCAGCTC 1294 Query 57113 GCTGCATACCGGTCCGACCCC----GTACTGCTCACGCAGCTTATCCAGCAGTGGCATCA 57168 || |||||||| |||||||| |||| ||| ||| | || |||||||| | Sbjct 1295 GCGACATACCGGCCCGACCCCATGTGTAC----CACTCAGACGTTGCATAAGTGGCATTA 1350 Query 57169 TTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGAT 57228 |||||||||| |||| |||| |||||||| |||||||||||| || |||||||| | || Sbjct 1351 TTTTTTCCAGTGGCGATCGAGCTCCGCCTGCGCAAAATAAGCAGAGGCCTGGCGCAATAT 1410 Query 57229 ATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTC 57288 || || |||||||| || || ||||| ||||||||||| |||| | |||||||||||| Sbjct 1411 GTCATTGCTGCGGCGTAGCTC-CGATTCTCACGTTCCAGTTCTTGTAAACGCTGACGTTC 1469 Query 57289 AGCGCTGGTGAGCCCACCATCA 57310 | | || | ||| | ||| || Sbjct 1470 ATTGGTGCTCAGCTCGCCAACA 1491 >seq31064 Length=750 Score = 269 bits (298), Expect = 1e-67 Identities = 485/709 (68%), Gaps = 20/709 (3%) Strand=Plus/Plus Query 56720 CGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTG 56779 |||||||||| ||||||||||||| ||||| ||||| |||||||| || ||| ||||| Sbjct 1 CGCCACATAGGCGAAGCCCTGCCAGGTGCTAACGTACGTAAAATCTGCACACCAAAGCTG 60 Query 56780 GTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTTCCG 56839 | || ||||||||||| ||||| |||||||| | || |||| || | | ||| || Sbjct 61 ATTGGGACGTTCTGCCACAAACTGGCGGTTTACCAGATCCGCTGCTGCCGCTGTTTTACG 120 Query 56840 GCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCAT 56899 | ||| || || || ||| || ||||| || || ||| || || | ||| Sbjct 121 ACCGATCGTGGTCTTGATGACTTTGCCACGGAGTACGCCCCGAAGACCTATTATTTTCAT 180 Query 56900 GAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCAGAC 56959 || ||| | || ||||| | || || || | || || || | ||||||||||||||| Sbjct 181 CAGGCGTTCAACAGTACACCGGGAGACGCTAAAGCCCTCGCGGAGCAACTGACGCCAGAC 240 Query 56960 TTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCTC-----TCTC 57014 ||| || | || || || | | |||||| |||| ||||| | |||||| | Sbjct 241 TTTTCGTGCTCCATAGACATTGTAATTTTCTCCGTAAACGCGTTTTATCTCCTGGATGGT 300 Query 57015 TTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGC 57074 || ||| ||| || | || || | ||| || ||||| | | ||||| Sbjct 301 TTGAGCA-----TCGCACTTTTCTCGTTGGCTACATTTCTCAGGATGTAGCTGGCGTTGC 355 Query 57075 TGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCG 57134 ||| |||||| || ||||||||||||| || ||||| |||| | || |||| ||| Sbjct 356 TGATGCCAGTAATATGTCGACGGGGCAATATCCAATTCGCGGCATCCTGGCCCGAACCCC 415 Query 57135 TACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCG 57194 || | ||| || | ||| ||||| |||| |||| |||| || |||||| |||| Sbjct 416 TATTCGCCACTCAAGTCATCAAGCAGCAGCATTATTTCATCCAATGGTGGTCGAGTTCCG 475 Query 57195 CCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGAT 57254 ||| |||| ||| || |||| |||||| | ||| ||||| || || ||||| Sbjct 476 CCTGGGCAAGATACGCCGAAGTCTGGCGCAAGATGTCGTTGCTACGTCGCAG-------- 527 Query 57255 TTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGC 57314 || ||| || |||||||| || ||| | |||||| || || || ||| ||||||||| Sbjct 528 -TTTACGCTCAAGCTCTTTAAGGCGCAGTCGTTCA-CGGGGGGGAATCCAGCATCACCGC 585 Query 57315 CCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAA 57374 |||| || ||| |||||||| || | || | ||| ||| | || | || || | Sbjct 586 TACCGGAATTCCGTTCATGCTGACGCAGCCCCGCCTGCAAAGTGTTAGGGCTGCAACCGA 645 Query 57375 TCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATC 57423 | ||||||||||| || || ||||| || || | |||| |||| Sbjct 646 TTTTTGGGGCAATAGAGAGGATGGCCGCATGCTCAGATTTATATCCATC 694 >seq13651 Length=3921 Score = 145 bits (160), Expect = 3e-30 Identities = 330/494 (67%), Gaps = 2/494 (0%) Strand=Plus/Minus Query 58782 CTGGCGCTGATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTTTCTGGATGAA 58841 ||||| ||||| || || || || || || |||| || | ||||||| ||| || Sbjct 3507 CTGGCCCTGATCGCGGCCGGCGCATCGGCTCCTGTCATGATGTCGCAGTTTCAGGAAGAG 3448 Query 58842 AAGGAAGGTAACCACACCACAGCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGT 58901 || |||||| | | | || ||||||| || |||| || |||||||| || ||| | Sbjct 3447 AAAGAAGGTCAGCGCCTGACCGCATACCAGGACGGTGTTGGAATCTGGACAATTTGCGGC 3388 Query 58902 GGAGCCACCCGGGTGGATGGTAAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGGAAAAA 58961 || | || ||| | || || ||| | || | ||| | || | Sbjct 3387 GGCGTGACGATGGTCAACGGCCAGAAGGTTGTGAAGGGGCAGCGCCTGACCGCCGAGCAG 3328 Query 58962 TGCGACCGGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAAACATC 59021 ||| | | | || |||| |||| | ||||| || | ||||| || ||| || Sbjct 3327 TGCAAGCAGATTGACGCAGCAGAGCAGAAAAAGGCTCTCGACTGGGTAGACCGCAACGTC 3268 Query 59022 AAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCGTCATTCTGTCCGTACAACATT 59081 || || ||||||||||||| || |||| || ||||| ||||||||||||| ||||| Sbjct 3267 AAGGTAACGCTGACCGAACCTCAAAAAGTTGGTATCGCCTCATTCTGTCCGTGGAACATC 3208 Query 59082 GGTCCCGGTAAGTGTTTCCCGTCGACGTTTTAC-AGACGAATTAATGCAGGTGATCGAAA 59140 || || || || || ||| | || || |||||| ||| | | || || || || || | Sbjct 3207 GGCCCTGGAAAATGCTTCACCTCCACCTTTTACAAGAAG-CTGAACGCCGGCGACCGCAT 3149 Query 59141 AGGTGCCTGCGAAGCTATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATTCG 59200 ||||||||| || || ||| | ||||| | |||| |||| |||| ||||| || || Sbjct 3148 TGGTGCCTGCCGAGAAATCCGCCGCTGGATATACGACGCTGGCCGAGATTGCCGCATCCG 3089 Query 59201 TTCAAACAACTGTTACGGTCAGGTATCCCGTCGTGACCAGGAGAGCGCGCTGGCGTGCTG 59260 || || ||||| ||||| ||| | || || || ||||| || || || ||||| Sbjct 3088 CTCGAATAACTGCTACGGGCAGATCGTACGGCGCGATCAGGAAGCCGAACTAGCTTGCTG 3029 Query 59261 GGGAATCGACAGAT 59274 |||| | |||| || Sbjct 3028 GGGATTGGACAAAT 3015 >seq35391 Length=557 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 52499 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 52558 ||||| ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 191 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 132 Query 52559 CCAGCAAGGGCCACCATAT 52577 ||| || ||||||||| || Sbjct 131 CCAACAGGGGCCACCAAAT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200444450545548