Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1592 84.2 1e-11 >seq1592 Length=29089 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| || |||||||| || || ||||| || || | || | ||| || Sbjct 433 ACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCA 492 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | || |||||| ||| || || | |||||| || | ||| ||||||||||| || | Sbjct 493 AGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCCTGA 552 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || | ||| || | | |||||||| | || ||| |||| || || || ||| Sbjct 553 ATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGATGGTCTTT 612 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| | ||||| || || || ||||| Sbjct 613 CCCGTCAAGGTTTTGACAAAGATCTGCAT 641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318634612705992