Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq12857 95.1 9e-15 seq1592 91.5 1e-13 >seq12857 Length=4317 Score = 95.1 bits (104), Expect = 9e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||||||||||||| ||||| | ||||| ||| |||| | |||||| | Sbjct 4116 CATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGGATACCTTCCT 4175 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| |||||| |||||| | | | ||||| | | ||| || || | || | Sbjct 4176 TATCCTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGACTTCCAATGTGA 4235 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||||||||| | |||||| || || || ||||| Sbjct 4236 TGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 >seq1592 Length=29089 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| | | || || || ||||| || ||| || ||||||||||| |||||| Sbjct 186 ACCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGA 245 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || | || |||| || || || || || ||||| | ||||| ||| |||| Sbjct 246 CAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGG 305 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| |||||| |||||| | | | ||||||| | ||| || Sbjct 306 GATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTAC 365 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || || || || || || |||||||| Sbjct 366 TTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 43937 TGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAAC 43996 |||||||| |||||| || || | || |||| || || || || || ||||| Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 43997 CGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACA 44056 | ||||| ||| |||| | |||||||| ||| |||||| |||||| | ||| Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATC 120 Query 44057 GTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATT 44116 ||||| | | ||| || || | || || ||||||||||| | |||||| || || || Sbjct 121 GTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATC 180 Query 44117 TGCAT 44121 ||||| Sbjct 181 TGCAT 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354618464950992