Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12857 187 6e-42 seq2779 172 1e-37 seq121 172 1e-37 seq1592 156 1e-32 seq532 131 4e-25 seq1483 96.9 8e-15 >seq12857 Length=4317 Score = 187 bits (206), Expect = 6e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || |||| ||| | |||||||| ||||||||||| || ||||| || || | | Sbjct 3827 AGCCTCAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGA 3886 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| |||||||||||||||||||| | ||||||||||| ||||| || |||||| Sbjct 3887 CCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATGCCTTCT 3946 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || |||||||| || ||||| |||||||| | |||||| | || || || | ||| Sbjct 3947 TTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGACTTCCAATGTG 4006 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||||| || || || || || || |||||||| Sbjct 4007 ATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| |||| |||||| || ||||| ||||||||||| || ||| Sbjct 4043 ATACCACCACGTAGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCA 4102 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| ||||||||||| ||||| || | ||||| ||||| ||| Sbjct 4103 GAAAGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGA 4162 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||||||||| || ||||| ||||| |||| ||||| | || Sbjct 4163 GGGATACCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCG 4222 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || ||||| || || || || || || |||||||| Sbjct 4223 ACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| || | ||||| ||||||| |||||||||||||||||||||||| || | Sbjct 3588 TTCCGCCTCTAAGACGGAGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTG 3647 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | | ||| | ||||| || || || || || || ||||| || || || |||||||||| Sbjct 3648 ACAAAGTACGTCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAG 3707 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || || ||||| || ||||| || || |||||||| || | ||||| || |||| Sbjct 3708 GAATGCCCTCTTTGTCTTGAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTA 3767 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| | || ||||| || || || | ||||| || || || ||||| Sbjct 3768 CCTCCAAAGTGATAGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 >seq2779 Length=20704 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| || | ||||||||| || ||||||||||| || || |||||||| || ||||| Sbjct 8167 ACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCATCTTCC 8226 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || || |||||||| || | || ||||| ||||| ||||||||||| ||||| Sbjct 8227 AGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTGTCCTGG 8286 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || ||||||||||| || || | ||| || || ||| || || || ||||| || || Sbjct 8287 ATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATGGTTTTG 8346 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||| ||||| ||||||||| Sbjct 8347 CCTGTAAGAGTTTTCACAAAGATCTGCATT 8376 >seq121 Length=74473 Score = 172 bits (190), Expect = 1e-37 Identities = 152/190 (80%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| || || ||||| ||||| ||||| | || ||||| || |||||||||||||| | Sbjct 8121 CTTTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAGCAAAGA 8180 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| ||||| || || ||||| ||||||||||||||||| ||||| ||||||| Sbjct 8181 TAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTT 8240 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | |||||| | ||||||||| || ||||| || |||||||| || ||||| || | Sbjct 8241 CGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTGACGA 8300 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 8301 AAATCTGCAT 8310 >seq1592 Length=29089 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| || | || || || || ||||||||||| || ||||| Sbjct 412 ATACCACCACGTAGACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCG 471 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || |||||||||||||| || | || || ||||| || Sbjct 472 GAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGG 531 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||||||||| || ||||| ||||| || | || || || ||| Sbjct 532 GGGATGCCTTCTTTATCCTGAATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCA 591 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | ||| || ||||| || || | ||||| ||||| ||||||||| Sbjct 592 ACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCATT 642 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || || || || ||||| | || ||||| ||||||||||| || || Sbjct 640 ATTCCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCG 699 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| || ||||| || || ||||| | | ||| || ||||| Sbjct 700 GACAAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGT 759 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| ||||||||||| || ||||| || || | || || | ||| Sbjct 760 GGAATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCA 819 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || ||||| | ||| || ||||| |||||||| Sbjct 820 ACTTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCAT 869 >seq532 Length=46805 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 268829 GAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTT 268888 || |||||| ||||| ||| || | | ||||| ||||| | | ||||| |||||| Sbjct 27739 GACGAAAGATACTTTATCTCTCATGTCTTGGCGTTCTTTGCTGCTTCCGATGGAATCGTT 27798 Query 268889 AACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTT 268948 || || ||||| | |||| ||| |||||||||| | || | ||||| | ||||| Sbjct 27799 AATGAGAATCTGATTGAGAGATTCAGTCAAGAGGTGAAAATCGCGGAAGCACGTTGTTTC 27858 Query 268949 TACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGAT 269008 ||||| |||||||| || ||||||||||||||||| |||||||| || | || || Sbjct 27859 TACGGCTTCCAGATCGCCATAGAAAATATTCATTCTGAGATGTATTCCTTACTCATCGAA 27918 Query 269009 ACTTATATAGATGATAACAACGAAAAGAAAAGACTAT 269045 |||||||| ||| | || |||||| || ||||| Sbjct 27919 ACTTATATTTCCGATCAAAAAGAAAAGTAAGTACTAT 27955 >seq1483 Length=30179 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | || || |||||||||||||||||||| ||||| |||| ||| ||||| ||| Sbjct 23264 AGTACCAAGTGCAAGGTAGATTCTTTCTGAATATTGTAGTCGGATAAAGTCCTACCATCT 23323 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || | ||| || |||||||| || | || || ||||| || || |||||| Sbjct 23324 TCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCGGAATTCCT 23374 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| ||||||||||| || || ||||||||||| | ||||| | || ||||| Sbjct 23756 CCTTCCTTATCCTGAATTTTCGCCTTTACATTTTCGATCGTATCCGACGCCTCGACCTCG 23815 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 23816 AGGGTGATGGTCTTACCGGTAAGAGTTTTCACAAAGATCTGCAT 23859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150855456645232