Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq36678 100 7e-17 >seq36678 Length=505 Score = 100 bits (110), Expect = 7e-17 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 27636 TAGGGGTTAATGAATCGCAAATTTCGCGATGGAAAGACAGCTTCATCCCAAAAATGGGAA 27695 |||| ||||| ||| ||||| | || |||||||| | ||||| |||| | Sbjct 413 TAGGTGTTAACCCATCTCAAATCACACGCTGGAAAGAGTCTCTTATCCCTCGCATGGCGA 354 Query 27696 TGCTTCTGGCTGTTCTTGAATGGGGTGTTGAAGACGAGGAGTTGGCGGAACTGGCTAAGA 27755 || | ||||| ||||| || |||||| | |||||||| || ||||||| |||||||| Sbjct 353 TGTTACTGGCCGTTCTGGAGTGGGGTATGGAAGACGAAGAAATGGCGGAGTTGGCTAAGC 294 Query 27756 AAGTAGCCAGAATGCTGACA---AAAGAAAAAGCCCCGAAGAACGGCGAATTCTTCGAGG 27812 | || || ||| || |||||||| |||||| ||| | | | ||||||| Sbjct 293 GCCTGGCTGGATATCTGTCACCAAAAGAAAACGCCCCG--GAA-GTTGCAGCTTTCGAGG 237 Query 27813 CCTAATGTAGAAAGACTGGATCAATCCACGGGAGTAATTATGACAAA 27859 | | || ||| ||||||||||| ||| |||||||||||| |||| Sbjct 236 CGTGATTGCGAATTACTGGATCAATTCACAGGAGTAATTATGGCAAA 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124761449479240