Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq680 102 2e-17 >seq680 Length=42727 Score = 102 bits (112), Expect = 2e-17 Identities = 220/326 (67%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 37516 CGCGATACGCGGCTGCATCGTGGCGCCCGAGGGCAAGAAGCTGGTCGTCGCCGACCTGTC 37575 |||| | |||||||||||| | || | ||| || || || ||||| |||||| |||| Sbjct 19467 CGCGCTGCGCGGCTGCATCATCCCGACGCCGGGTAAAAAACTCGTCGTTGCCGACTTGTC 19408 Query 37576 GAACATCGAAGGACGCATGATTGCGTGGCTCGCCGGCGAGGATTGGAAGCTGGCCGCTTT 37635 ||||||||| || ||| | | |||| | || || || | |||||||||| || || Sbjct 19407 GAACATCGAGGGGCGCGGGCTGGCGTTCTTGGCTGGTGAAAAATGGAAGCTGGAAGCGTT 19348 Query 37636 CCGTGAATTCGACGACGGCGCCGGCCCCGACCTCTACAAGCTGGCCTACGCCAAAGCCTT 37695 | | || |||| |||| || ||||| ||||| |||||||| || || || Sbjct 19347 CGCAGCATACGACAGGGGCGAAGGTGAAGACCTTTACAAACTGGCCTATGCTCGTGCGTT 19288 Query 37696 CGCGGTGTCGCCTGATTCGGTCGATAAAGACCAGCGCCAGATTGGCAAGGTCATGGAACT 37755 | | || | ||| | || ||| | | || ||||| ||||||||||||||| | Sbjct 19287 CAACATCTCCGCCGATGCCGTTGATGACCTCGGACGTCAGATCGGCAAGGTCATGGAATT 19228 Query 37756 GATGCTGGGCTACGAGGGCGGCGTCGGTGCCTTTCT-CA--CCGGGGCGGCTACCTACGG 37812 | | || || | ||||||||||| || || | || || | || ||| | Sbjct 19227 GGGCTTAGGGTATGGTGGCGGCGTCGGCGCGTTCATGCAGTTCGCGAAGG---TGTACCG 19171 Query 37813 CATCGACCTTGACGCGATGGCCGACG 37838 | ||||||| ||||| ||||||||| Sbjct 19170 CCTCGACCTGTACGCGCTGGCCGACG 19145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135796624474840