Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1592 105 6e-18 seq2779 96.9 3e-15 seq12857 95.1 1e-14 seq616 87.8 2e-12 >seq1592 Length=29089 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | || |||||||| || ||| ||||||||||| |||||||| | Sbjct 186 ACCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGA 245 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||||||||||||||| || || |||| || | |||||||||| || Sbjct 246 CAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGG 305 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| ||||| |||||| |||| | | | || ||||| | || ||| Sbjct 306 GATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTAC 365 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || ||||| || || | ||||| || ||||| ||||| Sbjct 366 TTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48542 TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAA 48601 ||||| |||||||| | ||| || |||||||||||||||| || || |||| || Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 48602 CGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATG 48661 | |||||||||| || | | ||| ||||| |||||| |||| | | | || Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATC 120 Query 48662 GTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATC 48721 ||||| | | ||| || | ||| |||||||||||||||||||| || || |||||| Sbjct 121 GTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATC 180 Query 48722 TGCAT 48726 ||||| Sbjct 181 TGCAT 185 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || || || | || | ||| || ||| ||||| ||||| |||||||| | | Sbjct 643 CCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGAC 702 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || |||| || ||||| || ||| || |||| || |||||||| || || Sbjct 703 AAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGA 762 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || || |||||| ||| ||| ||| | | | || || || | || || | | Sbjct 763 ATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAG-AGGCTTCAAC 821 Query 48680 T-CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | ||| ||||| ||||| || || | || ||||||||||||||||| ||| Sbjct 822 TTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCATGGTG 873 >seq2779 Length=20704 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | || ||||| |||||||| ||||||||||| || ||||| | Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAA 8208 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | || ||||||||||||||| | |||| | ||| |||||||| || Sbjct 8209 AGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGA 8268 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA-CGCTATGGTATCGGTAGACTCCGT 48678 | | ||| |||||| ||||| ||||| | | | ||||| || | || || || Sbjct 8269 ATTCCTTCTTTGTCCTGGATTTT-TGCTTTTACGTTCTCGATGGTGTCTGAAG-CTTCGA 8326 Query 48679 CT-CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | | || |||||||| || || |||||||||||||| |||||||| Sbjct 8327 CTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 >seq12857 Length=4317 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 48518 ACTAAATG--AAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCC 48574 |||||||| |||| || | ||||| ||||| |||||||||| || || || | || Sbjct 4064 ACTAAATGTAAAGT-TGAT-TCCTTCTGAATATTGTAATCAGA-AAGCGTGCGACCATCT 4120 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || || || || || | | || || | |||||||||| || | || |||||| ||| Sbjct 4121 TCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGGATACCTTCCTTATCC 4180 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 |||||| |||| | | |||| ||||| | | ||| || | ||| |||||| Sbjct 4181 TGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGACTTCCAATGTGATGGTT 4240 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||||||| || || ||||||||||| Sbjct 4241 TTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | |||||||| || || ||||| ||||| |||||||||| Sbjct 3817 ACCACCACGAAGCCTCAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGA 3876 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || | || || || || || || | |||| || | ||| |||||| | Sbjct 3877 -AAGCGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAG 3935 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| |||||| |||||| |||| | | || ||||||| | ||| Sbjct 3936 GGATGCCTTCTTTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGA 3995 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| ||||| |||||||||||||| || || ||||||||||| Sbjct 3996 CTTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 >seq616 Length=44600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 52450 GAATTGGCAGCGGCTGGATTTTATTACACAGGCCATTCAGATCAAGTGAAT-TGCTTTTA 52508 ||||||||||||||||| || | |||||| || | |||| || | | |||| | | Sbjct 25970 GAATTGGCAGCGGCTGGTTTCTTTTACACGGGAAACGGTGATC-AGACATTGTGCTATCA 25912 Query 52509 TTGCGGAGGGGGTTTAAGAGATTGGAAGACTGGAGACGATCCTTGGCAACAGCACGC 52565 ||||||||| || || ||||||||| || ||| || ||||||||| |||||||||| Sbjct 25911 TTGCGGAGGAGGATTGAGAGATTGGGAGCCTGAGGATGATCCTTGGGAACAGCACGC 25855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421062248300804