Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq14309 145 5e-30 seq27420 141 6e-29 seq35391 87.8 1e-12 >seq14309 Length=3649 Score = 145 bits (160), Expect = 5e-30 Identities = 275/396 (69%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 31660 ATGCTAATAGGCTATGTACGCGTATCAACAAATGAACAAAACACTGCTTTACAACGAAAC 31719 ||| | || ||||||| || || || || | || |||| | | || ||||| | Sbjct 1825 ATGTTGATCGGCTATGCCCGTGTCTCGACGCAGGATCAAAGCCTAGAGTTGCAACGCGAA 1884 Query 31720 GCTCTTGA--AAGCGCAGGATGTGAGCTAATTTTTGAGGACAAGGCGAGCGGCAAAAAGG 31777 ||| |||| ||| || || ||| || ||| ||||||||||||| |||||| | || Sbjct 1885 GCT-TTGATCAAG-GCCGGGTGTCAGAAAATCTTTGAGGACAAGGTGAGCGGTACGCGGG 1942 Query 31778 CTGAGCGCCCTGGGTTAAAAAAGGTACTCCGTATGCTTTCCAGAGG-TGATACCCTGGTC 31836 | || ||||| || ||| ||| | || ||||| | ||||| ||| ||||| || Sbjct 1943 CCGACCGCCCCGGTTTAGGAAAAGCACAGGAGATGCTG-CGAGAGGGTGACACCCTCGTG 2001 Query 31837 GTATGGAAGTTAGACCGTCTTGGGCGCAGCATGCGTCACTTAGTTGTGCTGGTGGAAGAG 31896 || |||||| ||||||| || || |||||| | || |||| | ||||| | || Sbjct 2002 GTTTGGAAGCTAGACCGCCTGGGACGCAGCGTCAAACAACTAGTCGATCTGGTTGGCGAA 2061 Query 31897 CTGCGTGA-CAGAGGCATTAACTTCCGGAGTCTCACTGACTCCATCGACACCAGTACACC 31955 |||| | ||| | | | | ||| || || ||||| |||||||||||| | || || Sbjct 2062 CTGCACAAGCAG-GACGTCCAGTTCAAAAGCCTGACTGATTCCATCGACACCGGCACGCC 2120 Query 31956 AATGGGGCGCTTTTTCTTTCACGTAATGGGGGCGCTGGCAGAAATGGAACGTGAGCTTAT 32015 || || || ||||| ||||| |||| || || |||||||| |||||||| || Sbjct 2121 TTCTGGCCGATTCTTCTTCCACGTCATGGCCAGCCTCGCCGAAATGGAGCGTGAGCTAAT 2180 Query 32016 CGTTGAACGTACACGCGCTGGACTTGATGCAGCTCG 32051 ||| || ||||||||||| ||| | |||| ||||| Sbjct 2181 CGTCGAGCGTACACGCGCCGGATTAGATGTCGCTCG 2216 >seq27420 Length=994 Score = 141 bits (156), Expect = 6e-29 Identities = 259/372 (70%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 72264 ATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAG-ATAACCGAACGCTG--GAA 72320 ||||||||| |||| | |||| || || | || |||| | ||||| |||| || Sbjct 981 ATCGACTACTTGCAGTTGATGCAGGTGCCGG-GCAACAAGGAAAACCG--CGCTACCGAG 925 Query 72321 ATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTG 72380 ||| |||||||||| || || |||||| |||||||| ||| | | || |||||| | Sbjct 924 ATTTCCGAGATTTCGCGTTCGTTGAAGGGCTTGGCGAAAGAACTCAATGTGCCGGTGATC 865 Query 72381 GCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCA 72440 || |||| || || || || ||||| ||||||||||||||||| || ||| | | || Sbjct 864 GCGCTGTCCCAGCTCAACCGCTCGCTGGAACAGCGTGCGGACAAGCGGCCGATGATGTCC 805 Query 72441 GATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGC 72500 ||| | |||||||| || || || |||||||| || || | || ||||| | || || Sbjct 804 GATCTGCGTGAATCGGGCGCTATCGAGCAGGATGCCGATGTCATCATGTTCATCTACCGT 745 Query 72501 GACGAAGTTTATCACCCGG-ATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAA 72559 ||||| || || || || || | |||||| | ||||| | || ||||| || Sbjct 744 GACGAGTACTACAACAAGGAATCGCCCGACAAAGGGC-TGGCCGAAATCATCATCGGCAA 686 Query 72560 GCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTT 72619 ||| || || ||||| | || || ||| | | | ||| || |||||| | ||| Sbjct 685 GCAGCGCAACGGCCCCACCGGTACCATGAAACTCACCTTTCTAGGTCAATACACCAAGTT 626 Query 72620 TGATAACTATGC 72631 || ||||| || Sbjct 625 CGAGAACTACGC 614 >seq35391 Length=557 Score = 87.8 bits (96), Expect = 1e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992 ||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||| Sbjct 191 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 132 Query 70993 CCGGTAGGGGCCACCATATTT 71013 || ||||||||||| |||| Sbjct 131 CCAACAGGGGCCACCAAATTT 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303099184230084