Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq680 95.1 3e-15 >seq680 Length=42727 Score = 95.1 bits (104), Expect = 3e-15 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 30046 TCGTGAACGTGACGAACGCGCCGACGCCACCCTCATAGGCGAGCGCCAGCTCCATCACCT 30105 ||| |||| | ||||||||||||||| || |||| | | ||| ||||| |||| Sbjct 19181 TCGCGAACTGCATGAACGCGCCGACGCCGCCACCATACCCTAAGCCCAATTCCATGACCT 19240 Query 30106 TGCCGAGCTGGCGCATGTACTTGTCGACCGCTTCGACGGCTACGCCGAACGCCCGTGCAT 30165 |||||| ||| || | | || || || ||| ||| | | |||||| || |||| Sbjct 19241 TGCCGATCTGACGTCCGAGGTCATCAACGGCATCGGCGGAGATGTTGAACGCACGAGCAT 19300 Query 30166 ATGCAAGCTTGTACAAGTCGGCGCCGATGCCGGCGTCGAAGTCGCGGAACGCCTGCAGCT 30225 | || || ||||| | ||| | || ||| |||| | | |||||| | ||||| Sbjct 19301 AGGCCAGTTTGTAAAGGTCTTCACCTTCGCCCCTGTCGTATGCTGCGAACGCTTCCAGCT 19360 Query 30226 TCCACTTCTCGCCGGCCAGCCACGCCGCGTCGCGGCCTTCGATGTTCGACAGGTCGG 30282 |||| || || || |||| ||||| |||| || ||||||||||||| ||||| Sbjct 19361 TCCATTTTTCACCAGCCAAGAACGCCAGCCCGCGCCCCTCGATGTTCGACAAGTCGG 19417 Score = 82.4 bits (90), Expect = 2e-11 Identities = 168/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 26339 CCGCCGTCCTGCAGGTTCAGGCCGTGGCCGGCGCTGGCCGGGTGCGCGAACATCACCGGG 26398 || || || ||||| |||| || || |||||||| | |||||||||||||| | ||| Sbjct 14143 CCACCATCTTGCAGATTCAACCCATGCCCGGCGCTCGACGGGTGCGCGAACAGAATCGGA 14202 Query 26399 ATCTTGCCAGCGTTCCAGTCGCGGAT-CGTCTGCGGGTTCTGGTCGAGCTGGCGGCCGCG 26457 || | ||| |||||| ||||| | ||||| || |||| ||||| || || Sbjct 14203 ATTTCGCCCCGGTTCCA-TCGCGCCTGCGTCTCGGGTTTCTTGTCGATCTTCACCCCTTT 14261 Query 26458 CGGGAACGCGCGCTGCAGCCGCGCGAGATCCGACTTGAAGTGGTAGGCCACGAGCACGGG 26517 ||||||| |||||||| || ||||| || ||||||| ||||||| || || Sbjct 14262 CGGGAACCGTTTTTGCAGCCGGGCTAGATCGTGTTTCCAGTGGTACGCCACGATAACCGG 14321 Query 26518 CATGCCGGCCGCTTCCTCGACGATTTCCTCGAGCGCCTGCAGTTTCAGGTCGTGCACCTC 26577 | |||| | || |||| || |||||| | | ||| ||| | |||||||| Sbjct 14322 CGCGCCGCTCAACTCTTCGATTATCGACTCGAGTTCGTCCAGCTTCGCTTTATGCACCTC 14381 Query 26578 GTGCCAC 26584 | |||| Sbjct 14382 TTCCCAC 14388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135547133561896