Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq3165 107 2e-18 seq942 86.0 7e-12 >seq3165 Length=18988 Score = 107 bits (118), Expect = 2e-18 Identities = 205/298 (69%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 164408 AAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGCATTTGCTT 164467 ||||||| | ||||| | ||| |||||| ||||||||| |||||||||| | Sbjct 5648 AAATGGGTATTGGTGGTTTGGATAAGGAATTTAGCGCCATTTTCAGAAGAGCATTTGCAT 5589 Query 164468 CTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATAAAAGGAATTT 164527 || | |||| | || || | | |||| || || || ||| |||||||||||| Sbjct 5588 CTCGCGTCTTTCCAACGGAGATTGTTACTCAATTGGGTTGCAAGCATGTAAAAGGAATTT 5529 Query 164528 TATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCAT-TGCTCAAGCT 164586 | || ||||||| |||||| || ||||| ||||||||||| || | ||| | Sbjct 5528 TGCTATATGGACCACCTGGTACGGGAAAAACGTTAATGGCTCGGCAAATAGGAACAA--T 5471 Query 164587 TTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTA 164643 |||||| | || || || ||||| ||||| || || | ||| | |||||||| Sbjct 5470 GTTAAATGCAAGAGAGCC--AAAGATTGTAAATGGCCCACAAATTTTGGATAAATATGTT 5413 Query 164644 GGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGA 164701 || || |||||||| || |||| |||||| || || ||||| ||| |||||| Sbjct 5412 GGAGAAAGTGAAGCTAACGTCAGAAGATTGTTTGCCGATGCAGAAGAGGAAGAAAAGA 5355 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 164783 TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATA 164842 ||||||| |||||||||||||| |||| | || || |||||||| ||| ||||||| Sbjct 4960 TTCATGACACAGTGGTTAATCAGCTGCTCGCAAAGATTGATGGTGTTGAACAATTAAATA 4901 Query 164843 ATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGAC 164902 | ||| | || | ||||||||||| || || | || || || ||||| ||||||| Sbjct 4900 ACATTCTCGTTATCGGTATGACCAATAGAAAGGACATGATCGACGAAGCTTTGTTACGAC 4841 Query 164903 CTGGTCGATTAGA 164915 |||| |||| || Sbjct 4840 CTGGCAGATTGGA 4828 >seq942 Length=37279 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 ||||| || | ||| || ||||| | ||| || |||| ||||| || || ||||| ||| Sbjct 15862 TGAGCGATCATATAAGTCAATAAGGAATATGACGCTATGTTAAATGGCACTCCTAAACCC 15803 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTATAGCATAAAATTGA 7017 |||||||| |||||||||| || ||| || | || | |||||||||| Sbjct 15802 ATATCTGCGCTTCTTTGATAAAGCTGCGCAGACAATTCACCGTTATTTACATAAAATTGT 15743 Query 7018 CACAATACATGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCAAGCA 7074 || || ||||| || ||||| ||| | | ||||| |||||||||||| Sbjct 15742 ACCATAACGTGACACGGTGGTAA---TGCCATTTTTGGAATATCGACTGGATTCCAAGCG 15686 Query 7075 GTCATTAAAATACGTCTATCAT 7096 | ||||| |||||| ||||||| Sbjct 15685 GACATTATAATACGCCTATCAT 15664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595597869086400