Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq1287 178 7e-40 >seq1287 Length=32361 Score = 178 bits (196), Expect = 7e-40 Identities = 360/527 (68%), Gaps = 12/527 (2%) Strand=Plus/Plus Query 3617 AATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATG 3676 |||||||| | || || || ||||| || |||||||| || |||||||| || ||||| Sbjct 30167 AATGAATTACTGTACTTCGCCGACGTGTGTGCTGGTCCGGGCGGTTTCAGCGAGTATATT 30226 Query 3677 TTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaa--aaaaTG 3734 | | |||||||| ||| || ||||| | ||| | || || | ||| |||||| Sbjct 30227 CTGTCTAGAAAGAAGTGGCATGCTAAAGGATTTGGATTCACTTT--GAAAAACGAAAATG 30284 Query 3735 ATTTTCAACTGAAC-AGAT-TTTACGATAACTTTTCGGAAACTTTACACCCGTATTATGG 3792 | ||| | || || || | ||| | | | | ||||| || || || | || || Sbjct 30285 ACTTTACATTGGACGAGTTCTTTGCCGGCCCGTGT--GAAACCTTTCATCCTTTCTACGG 30342 Query 3793 TCCGCTTAACG--ATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATG 3850 | | | || | | || || | | || |||||||||| ||| ||| | || Sbjct 30343 TTC--TAAAGGCAACGGAGATGTGTTTGATCCACAAAATCAAGAAGAATTTAGATCTTTG 30400 Query 3851 ATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCG 3910 || |||||| | || | ||||||||||| |||||||||||| | || || || ||||| Sbjct 30401 ATAATGAAACACACGTATGGAAAAGGTGTGCATTTTATGATGTCAGATGGAGGATTCTCT 30460 Query 3911 GTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGT 3970 || || ||||||||||| || ||||| || |||| || || | ||| | ||||| ||| Sbjct 30461 GTGGAAGGTCAAGAAAACATACAAGAGATTCTATCTAAGCAGTTATATCTATGTCAGTGT 30520 Query 3971 TTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATA 4030 || | ||| ||||||| | || ||||| || | ||| | ||||| |||||| | Sbjct 30521 CTAGTAGCACTGATGATAGTGAGACCAGGTGGACACTTTGTGACAAAATTGTTCGATTTG 30580 Query 4031 TTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGT 4090 ||||| ||||| || | || | | ||| | |||||||||| ||| | |||||| Sbjct 30581 TTTACGCCTTTCAGCGTCGGACTTATTTATCTAATGTATAGATGTTTCGAAAATATTTGC 30640 Query 4091 ATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 || ||||| || || || | || || ||||| ||| | ||||| Sbjct 30641 ATCTTCAAGCCCAATAGTTCTAGGCCAGCTAATTCGGAACGTTATTT 30687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276429552228412