Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4285 122 5e-23 seq415 116 2e-21 seq13725 114 7e-21 seq15061 113 2e-20 >seq4285 Length=14825 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 4488 AAAAAAAAAACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 4429 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 4428 GCTCTAACCAACTGAGCTAATGGGCC 4403 >seq415 Length=51679 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 42204 AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 42263 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 42264 CAACTGAGCTAATGGGCC 42281 >seq13725 Length=3884 Score = 114 bits (126), Expect = 7e-21 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| || ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 3036 AAGAAAAAAAAAAGATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 2977 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||| |||||||||||||||||||| || Sbjct 2976 GACGCTCTAACCAACTGAGCTAATGGGCCTTC 2945 >seq15061 Length=3367 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1990 ATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 2049 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 2050 ACTGAGCTAATGGGCC 2065 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261373908449104