Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_006563.1 Length=7722 Score E Sequences producing significant alignments: (Bits) Value seq8046 138 6e-29 >seq8046 Length=7925 Score = 138 bits (152), Expect = 6e-29 Identities = 274/401 (68%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 1957 GAGGAGGGGGATTGGaaaaaaaTCGTGCAGTTCATTAGATTTCAAGGTATTGAGTTTCCA 2016 ||||| || |||||||| || || |||| | || ||| || | ||||| Sbjct 4042 GAGGAAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTG 4101 Query 2017 TTATTTTTTGGTGCATTGAAAAAATTCTTGCATGGTATACCTAAACATAATTGCAT--TG 2074 | ||| ||| ||| || || ||| || | ||| | || || | |||||||| || Sbjct 4102 TCATTCCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTG 4161 Query 2075 TTATATGGGGTCCCCCAGATACAGGGAAGTCTATGTTT-TGCATGAATCTTATAAAGTTG 2133 || ||||| || |||||||||| || || || ||| ||||||| |||| | |||| Sbjct 4162 TTTTATGGA--CCTGCAGATACAGGCAAATC-ATATTTCTGCATGAGTCTTTTGCAGTTC 4218 Query 2134 CTAGGTGGCAAGATTATATCCTTTGCAAATTCTAAAAGTCAGTTTTGGCTGCAGCCACTC 2193 ||||||||| | ||||| | ||| ||||| | || || |||||||||||||| | Sbjct 4219 CTAGGTGGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTA 4278 Query 2194 GCAGATGCAAAAGTGGGGCTATTGGATGATGCTACAGGAGTTTGTTGGGATTATATAGAT 2253 || || || | || ||| |||| ||||| || | || ||| ||||| ||| Sbjct 4279 GCTGACAGTAAGATAGGACTACTGGACGATGCGACGGCCCAGTGCTGGACGTATATTGAT 4338 Query 2254 CAGTACCTGAGGAATGCCCTAGATGGAAACCCTATAAGTATTGATTTGAAACATAGAGCG 2313 || || ||||| |||||||||||||| | ||||| || |||||||| | Sbjct 4339 ACATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACC 4398 Query 2314 CCGACGCAGATGAAATGTCCTCCATTATTAATAACTACGAA 2354 | | |||||| ||||||||||||||| | ||||| || || Sbjct 4399 CTGCTGCAGATAAAATGTCCTCCATTAATGATAACAACCAA 4439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24585016480416