Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3594 183 5e-42 seq770 176 7e-40 seq16670 168 1e-37 seq8401 168 1e-37 seq11802 145 1e-30 >seq3594 Length=17145 Score = 183 bits (202), Expect = 5e-42 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| | ||||| |||||||||||||| ||||| ||||| || || Sbjct 7893 GCGAAGAGGCATCGCAAAGTACTTCGCGATAACATCCAAGGCATCACTAAGCCGGCCATT 7952 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| ||||||||| | || |||||| | || ||||||| Sbjct 7953 CGTCGTCTTGCACGTCGTGGTGGCGTCAAGCGTATTTCCGGATTGATTTACGAAGAGACG 8012 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | |||||| ||| |||||| | ||| || | || |||||| Sbjct 8013 CGTGGTGTACTGAAAGTATTCCTCGAGAACGTTATACGTGACGCGGTTACTTACACCGAG 8072 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | |||||||| ||| ||||||| | ||||| || |||| |||||||| Sbjct 8073 CATGCAAAAAGGAAGACTGTGACCGCCATGGACGTTGTCTACGCCCTGAAGCGTCAAGG 8131 >seq770 Length=40581 Score = 176 bits (194), Expect = 7e-40 Identities = 187/247 (76%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| ||||| |||||||| || || |||||| |||| || ||||| Sbjct 16243 TCTTCGTGATAACATCCAGGGAATTACCAAGCCGGCCATTCGTCGTTTGGCGCGACGTGG 16184 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| |||| || || |||| ||||||| ||| | ||| |||||| | || Sbjct 16183 CGGTGTGAAGCGTATCTCCGGCTTAATCTACGAAGAGACTCGCGGTGTGTTGAAGGTGTT 16124 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| |||||| || ||| || || ||||| ||| | ||||| || Sbjct 16123 CCTTGAGAACGTGATCCGCGATGCTGTCACCTACACTGAACACGCCAAAAGAAAGACCGT 16064 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| |||| || || ||||||| |||||| | | | || || ||||| Sbjct 16063 GACTGCCATGGACGTCGTATACGCCCTGAAACGCCAAGGCAGAACTCTATACGGATTTGG 16004 Query 16693 AAGTTAA 16699 ||||| Sbjct 16003 CGGTTAA 15997 >seq16670 Length=2829 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||| | | | | || ||||||||||| || ||||| || ||||| || Sbjct 1365 GCTAAGCGGCATAGGAAGGTTTTACGTGATAACATCCAGGGTATCACTAAACCAGCCATA 1306 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| | ||||| || ||||||||| | ||||| ||| | |||||||| | Sbjct 1305 CGTCGTCTGGCAAGACGTGGCGGTGTCAAGCGTATTTCTGGCTTGATATATGAAGAAACG 1246 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || |||||| | ||||| | | |||||| | ||||||| | || |||||| Sbjct 1245 AGAGGCGTCTTGAAGGTGTTCCTAGAAAACGTTATACGTGATGCTGTAACGTACACCGAG 1186 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | |||||||| ||| | ||||| | |||||||| | ||||||||||| Sbjct 1185 CATGCCAAAAGGAAGACTGTAACCGCTATGGACGTGGTCTATGCTCTAAAACGTCAAGGA 1126 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||||||||| |||||| Sbjct 1125 AGAACCTTGTATGGTTTTGGTGGTTAAT 1098 >seq8401 Length=7593 Score = 168 bits (186), Expect = 1e-37 Identities = 187/247 (76%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| || || |||||||| || || | ||| ||||| | |||||||| | Sbjct 2432 GAGATAACATCCAGGGTATTACCAAGCCTGCAATTAGGCGTTTGGCTAGACGTGGTGGTG 2491 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || ||| ||||||| | |||||||||| | ||||| ||| |||||| | ||| | Sbjct 2492 TTAAACGTATCTCTGGTCTTATCTATGAAGAAACTCGTGGTGTGTTGAAGGTTTTCTTGG 2551 Query 16578 AGACCGTTATCCATGATG-CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | ||||||| |||| | || || || || ||||| ||||| | || ||||||||| Sbjct 2552 AAAATGTTATCCGAGATGCCGTTACA-TACACTGAGCATGCTAAGAGGAAAACTGTCACC 2610 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || || || |||||||| ||||| |||| | || ||||||||| || Sbjct 2611 GCTATGGATGTTGTATACGCCTTGAAACGCCAAGGACGTACTCTGTACGGTTTTGGAGGT 2670 Query 16697 TAATCTT 16703 ||| ||| Sbjct 2671 TAAACTT 2677 >seq11802 Length=4877 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || |||||||||||||| ||||| ||||| ||||| Sbjct 1149 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAAGGTATCACGAAGCCTGCTAT 1208 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||| ||||| || || || ||||| | |||||| | | || || || | Sbjct 1209 CCGCCGTTTGGCCCGTCGAGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAAC 1268 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||| | ||| ||| || | |||||| | ||| || || Sbjct 1269 GCGTGGCGTTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTGACCTACACGGA 1328 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| || || |||||||| | || || || |||| | ||||| Sbjct 1329 ACACGCCAAGAGGAAGACAGTTACAGCCATGGATGTTGTGTACGCTCTGAAGAGGCAAGG 1388 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 1389 CCGCACCCTCTACGGATTTGGCGGTTAA 1416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79041549845172