Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq18140 113 5e-21 seq7638 104 2e-18 >seq18140 Length=2420 Score = 113 bits (124), Expect = 5e-21 Identities = 180/257 (70%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 650 TCTCCAGCTCATCC-CGATGTGGGTAAAAACGTGAGCACTCAAAGAAAACGTGCTCTGCA 708 |||||| ||| | || |||| || ||| || | |||| | ||||| |||| || || Sbjct 1779 TCTCCAAGTCACCAGCGTTGTGTGTCAAACCGAGGGCACGCGAAGAACGCGTGTTCGGCG 1720 Query 709 TCTTCATTGACTCCTGGGCAGGATGGGCACTCTGGGGAATTATCATGCTTGGAGCGGTGG 768 || || || ||||| ||||| | |||||| ||||||| || | |||| | || | Sbjct 1719 TCCTCCTTTACTCCGCTGCAGGTTAAGCACTCCGGGGAATCCTCGTACTTGAATTTGTAG 1660 Query 769 AGATACGCCCGGAAACAGCCGTGTCCTGATAACATCTGTGTAAGATAATAGTTGACCTCA 828 || |||||||||||||| ||||| ||||| | |||||| || ||||| |||||||| | Sbjct 1659 AGGTACGCCCGGAAACACCCGTGCCCTGAGAGCATCTGGGTCAGATAGTAGTTGACGGCG 1600 Query 829 CCGTGACTCCGGTTTAGCCAAACGTTGATCCTTGGTATGAGACGATGCGTCCATCTACCA 888 | || | ||||| | ||| || | | | | || || || | |||||||| || Sbjct 1599 CTATGGTTGCGGTTGAACCACCTGTCTACCTTAGAAATCAGGCGGTAGGTCCATCTGCCC 1540 Query 889 TTCACTGTGGCATCCCA 905 || | | ||| ||||| Sbjct 1539 TTGATGGAGGCGTCCCA 1523 >seq7638 Length=8504 Score = 104 bits (114), Expect = 2e-18 Identities = 176/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 651 CTCCAGCTCATCCCGATGTGGGTAAAAACGTGAGCACTCAAAGAAAACGTGCTCTGCATC 710 |||||| ||| || |||| || ||| || | |||| | ||||| |||| || || || Sbjct 5775 CTCCAGGTCACTGCGTTGTGTGTCAAACCGAGGGCACGCGAAGAACGCGTGTTCGGCGTC 5834 Query 711 TTCATTGACTCCTGGGCAGGATGGGCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAG 770 || | ||||| ||||| | |||||| || || | || | |||| | || ||| Sbjct 5835 CTCCTCCACTCCGCTGCAGGTTAAGCACTCCGGAGAGTCCTCGTACTTGAATTTGTAGAG 5894 Query 771 ATACGCCCGGAAACAGCCGTGTCCTGATAACATCTGTGTAAGATAATAGTTGACCTCACC 830 |||||||||||||| ||||| ||||| | |||||| || ||||| |||||||| | | Sbjct 5895 GTACGCCCGGAAACACCCGTGCCCTGAGAGCATCTGGGTCAGATAGTAGTTGACGGCGCT 5954 Query 831 GTGACTCCGGTTTAGCCAAACGTTGATCCTTGGTATGAGACGATGCGTCCATCTACCATT 890 || | ||||| | ||| || | | | | || || || | |||||||| || || Sbjct 5955 ATGGTTGCGGTTGAACCACCTGTCTACCTTAGAAATCAGGCGGTAGGTCCATCTGCCCTT 6014 Query 891 CACTGTGGCATCCCA 905 | | ||| ||||| Sbjct 6015 GATGGAGGCGTCCCA 6029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50928718248344