Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq13213 104 3e-18 >seq13213 Length=4132 Score = 104 bits (114), Expect = 3e-18 Identities = 225/332 (68%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 12230 CTTTC--ATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGC 12287 ||||| ||||||||| || | | |||| ||| | |||| ||||| || || | Sbjct 1733 CTTTCTGATCAAAGAACGCAAGCGTAACAGCTTCACGACTTAAGTACCATAAGTGATTAA 1792 Query 12288 TAAATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTT 12347 ||| ||| |||| || || |||||| || ||| | || || || ||| | Sbjct 1793 CAAACTTTCTCAAAGCAACGCGAGATATGGCAGAATCAACGGTTTAGTAGCGAACAAGCT 1852 Query 12348 CCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGG---ACAAGTGAACC 12404 ||||| ||| | ||| | ||| || |||||| || ||||| |||| |||| Sbjct 1853 TTTTTAAGAATTGCAGATCGTGATTCGGTGCTTCAACAGCAAGAGGCGCACAA---AACC 1909 Query 12405 ATGCTTTGATATACACTG-TAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAAT 12463 | |||| | ||| | || || | ||||| | |||||| ||||||| || | || | Sbjct 1910 AAGCTTGAACATA-AGTGCTAACGATAAATAAACAAATGTCAGAAAAGGCACTTCTTTCT 1968 Query 12464 TTCACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTT 12523 ||| |||| | |||||||| | ||| || || || ||||||| |||| || |||||| Sbjct 1969 TTCGCCGTTAATTTGAATTCATCACGGAACAAGAACATTTTTAAGCTATAAATAGCTTTT 2028 Query 12524 GCCATCCACCTAGCGTGGTGGAATGCACCCGG 12555 ||||||||||| || || || | || ||||| Sbjct 2029 GCCATCCACCTTGCATGATGAATGGCTCCCGG 2060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63278660539316