Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq532 100 4e-16 seq5929 98.7 1e-15 seq2380 91.5 2e-13 >seq532 Length=46805 Score = 100 bits (110), Expect = 4e-16 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 33570 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33627 || |||||| ||||| | || || |||||| || |||||||| ||||| ||||| ||| Sbjct 27927 AATATAAGTTTCGATGAGTAAGGA--ATACATCTCAGAATGAATATTTTCTATGGCGATC 27870 Query 33628 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCC 33687 || || ||||||||||| | || || | || | || ||| || |||| || | Sbjct 27869 TGGAAGCCGTAGAAACAACGTGCTTCCGCGATTTTCACCTCTTGACTGAATCTCTCAATC 27810 Query 33688 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33747 | ||| ||||| || ||||| || || ||||| |||||||| ||||| ||||| Sbjct 27809 AGATTCTCATTAACGATTCCATCGGAAGCAGCAAAGAACGCCAAGACATGAGAGATAAAG 27750 Query 33748 TATTTTTCGTC 33758 ||| ||||||| Sbjct 27749 TATCTTTCGTC 27739 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 |||||| || | ||||||||||| ||| | |||||||| ||||||| ||||| ||| Sbjct 27590 TACTTCCTCTATGGTCCAAAATGACGCCACAGCCTTTTTGTACATGTCCCAGACATCAGG 27531 Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGG 33893 |||||| || |||||||| ||||| | |||||| Sbjct 27530 ATATTGAATGGGGAAAATTACAAAGCGATTTGG 27498 >seq5929 Length=11024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/318 (68%), Gaps = 12/318 (4%) Strand=Plus/Minus Query 62738 ACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAAT 62797 ||| |||||||||||||| | |||||| ||| | || ||| |||||| |||| | Sbjct 813 ACCAATAGGTCTATGTCTTTGATTAGAAGTTTTCGTCTCCAAAATGGGATAAAAATTGAC 754 Query 62798 ATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAG 62854 || |||| ||||| | ||| | |||| ||| |||| | || || ||||| Sbjct 753 GTCGATAACTTTATCCAAATTACGAGTGACGATT--TTTG-CAACTGTTTTAAGTTTATC 697 Query 62855 AAAATCAAA----TCGCCCATC-TATT-ACAAACATGTTCAAGGCAACAGATGCCAGATT 62908 |||||| || | | || |||| |||||||| || | |||| |||||||||||| Sbjct 696 AAAATCGAAAGTCTTGTTATTCGTATTCACAAACATATTGACAGCAATAGATGCCAGATT 637 Query 62909 ACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACA 62968 ||| || || || || || | | ||||| || | || ||||| | ||| || || Sbjct 636 ACACACAGCAACTTCCCCAGGGCCAGAGTATTGAATAACTTCGGTGCACAAATTGCTGCA 577 Query 62969 CTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 63028 ||||| || || | | || |||||| ||| || || |||||| ||||| || Sbjct 576 TTTGATTGTACCAATGTGCTGATGATTAGATTTTCGATTGCAGTGATCCTTGTAAAGCAT 517 Query 63029 GAATGGAGTACCAGTTTC 63046 | | ||||| |||||||| Sbjct 516 GTAAGGAGTTCCAGTTTC 499 >seq2380 Length=22946 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 ||||||| | || |||||||| || || ||||| |||| ||| ||||| || |||| | Sbjct 21293 CACTAAAAATCTTCTTTGTTTCTTTATGCAGATTAGATATGGCAATTCTAGCTGCTAAAG 21234 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | || ||||| | |||||| | | | | ||||| ||||| || || | |||||| Sbjct 21233 TTGCGTAATCTGCATGTTGATTGATCATACTTGCTGCAATTTCAGCCGCTAAGTTGTCCA 21174 Query 64075 ATTCTACCGTTGTTACTCCA 64094 |||| || |||||||||||| Sbjct 21173 ATTCAACTGTTGTTACTCCA 21154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622660613140640