Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_007052.1 Length=45861 Score E Sequences producing significant alignments: (Bits) Value seq8827 208 2e-49 seq2215 140 1e-28 >seq8827 Length=7080 Score = 208 bits (230), Expect = 2e-49 Identities = 339/476 (71%), Gaps = 14/476 (3%) Strand=Plus/Plus Query 25915 TAACAATAACATAATCTACAGTACGTAATGATTTC-AAGTCTTTTCCACCGGCATATGAA 25973 |||||| ||||||||| ||| | | | || ||| || ||||| || || ||||| ||| Sbjct 4458 TAACAAGAACATAATC-ACATTTCTTTATTGCTTCTAAATCTTTACCTCCAGCATAAGAA 4516 Query 25974 ATTGAGCTTTGTAAATCTTGTTGCATTTCTTTTAAGGTATCCATTAATGACCCCTTATGT 26033 |||| |||||| |||| || |||||||| | ||||| | || || |||| Sbjct 4517 ATTGCTGATTGTAAGTCTTCTTCTATTTCTTTATAAGTATCAGCAATTGGACCTTTATAA 4576 Query 26034 TCTACAAACAtttttttACCTTCTACATTTTTATGTTCGCCTTTTTGAAATTCAGATGCA 26093 || || ||||| |||||||| | |||||| ||| |||| | ||| || || Sbjct 4577 GAAACTAAAATTTTCTTACCTTCAATATTTTTTGTTTCTACTTTATTAAAGACACTAGCT 4636 Query 26094 CTACCAAAATATTCTTTATACTGTTTACCATCA--AGTT-CTACAGTTTCACCAGGTGAT 26150 |||| ||||||||||||| | ||||||| | |||| ||| |||| ||| || ||| Sbjct 4637 GAACCATAATATTCTTTATATTTCTTACCATTATTAGTTACTA-AGTT--ACCTGGAGAT 4693 Query 26151 TCTTCGTGTGCCGC--AAATAATGAACCAATCATGACCATTGATGCACCAAATCTAATTG 26208 || || || | || ||||| | ||| ||| | ||||| ||| ||||| | ||||| Sbjct 4694 TCATCATGACCAGCTAAAATACT--ACCTGCCATAATCATTGTTGCTCCAAAGCGAATTG 4751 Query 26209 ACTTAGCGATGTCGCCATGCGTTCTTATGCCACCATCGGCAATCAAAGGTTTACGAGCTG 26268 |||||| || || |||| | ||| |||||||| ||||| |||||||| ||| Sbjct 4752 CCTTAGCAATATCACCATTACAACGTATACCACCATCAGCAATTAAAGGTTTTTTAGCAA 4811 Query 26269 CTTTACT-ACATATGTTTAATGCCGCTAACTGCCAACCACCAGTACCAAAACCTGTTTTA 26327 ||||| | | || | ||||| || ||| || || ||||| ||||||||||| ||||| Sbjct 4812 CTTTATTTAAATCT-TTTAAAGCATTTAATTGTCATCCACCTGTACCAAAACCAGTTTTC 4870 Query 26328 ATCTTTGTAATACAAACTCTACCAGGACCTATACCGACTTTGGTAGCATCAGCACC 26383 | || |||||||| ||| ||||||| || | ||| ||||| ||||||||| || Sbjct 4871 AATTTAGTAATACATACTTTACCAGGTCCAACACCAACTTTTAAAGCATCAGCTCC 4926 >seq2215 Length=24088 Score = 140 bits (154), Expect = 1e-28 Identities = 385/579 (66%), Gaps = 32/579 (6%) Strand=Plus/Plus Query 26311 TACCAAAACCTGTTTTAATCTTTGTAATACAAACTCTACCAGGACCTATACCGACTTTGG 26370 |||||||||| ||||| | || |||||||| ||| ||||||| || | ||| ||||| Sbjct 1 TACCAAAACCAGTTTTCAATTTAGTAATACATACTTTACCAGGTCCAACACCAACTTTTA 60 Query 26371 TAGCATCAGCACCAGCAT-TTTCTAATTCTCTAACACCTTCTGGCGTACCAACATTACCA 26429 ||||||||| || ||| ||||||| || |||| ||| | | || |||||| Sbjct 61 AAGCATCAGCTCCT-CATGTTTCTAAATCCTTAACTGCTTGTTCACTCATAATATTACCT 119 Query 26430 GCAATAACAAAACTATCAG-----GTATATGG----GTTT---TAATATGTTTAATCATG 26477 |||||||||||| | || |||| | |||| ||||| ||| | ||| Sbjct 120 GCAATAACAAAAGGCTTAGTTTTAGTATCTTTAAAAGTTTCTTTAATAAATTTCAGCATT 179 Query 26478 TTT---ATCACTGAATCTGAGTGACCATGCGCAATATCTATTGTAATATATTCGGGGATT 26534 | | ||||| ||| | |||||||| |||||||| || |||||| | || || ||| Sbjct 180 TCTTCCATCAC--AATACTA-TGACCATGAGCAATATCAATCGTAATAAAATCTGGAATT 236 Query 26535 AATTTTTCTTGAGCTAACTTTTCAATAAAATCAAATTCCGCTTTCTTTACACCAACTGAA 26594 || | | ||| |||| | || ||| | ||| ||| || ||||| | Sbjct 237 AAATCCAATGATTTTAATTTTTTTAAAAGATCTTTATGTTCTTGCTTAACTCCAACGCTA 296 Query 26595 ATAGATGCAAATAAGCCTGAATTTTGCATATGTTTTATAAAAGGTATTCTTGCTTCTTCA 26654 ||||| || |||| | |||| || || | | |||| ||| || | | | Sbjct 297 ATAGAAACATATAATTTAGCTTTTTTCAACTGCCTAACAAAAACAATT--TGATCAAT-A 353 Query 26655 TCAAAACGATGCATGATATAAAAGTAATCATTTTCAGCAAACCATTTCGCTAATTTCTCA 26714 | |||||||||||| |||||||| |||||||||| || || || |||||||||| Sbjct 354 TTAAAACGATGCATAATATAAAAATAATCATTTTTTGCTAATCAAAAACATAATTTCTCA 413 Query 26715 TTCATAACTGTTTGCATATTTGCAGGAACTACAGGTAGCTTGAATTTTTTCGGACCA--- 26771 | | ||||| ||||||||| ||||| || || | || || || |||| Sbjct 414 TCAACAACTGCACTCATATTTGCTGGAACAACTGGAATTTTAAA---CTTAAAACCATTT 470 Query 26772 AATTGGATAGTTGTATCACATTCTGATCTACTCTCAACTATACATTTATTAGGTATTAAT 26831 |||| ||| | |||||||||| ||| |||||| || | || ||| ||||| Sbjct 471 AATTCAATACTAGTATCACATTGGTTTCTCGACTCAACAATGCCCTTGCTAGCAATTAAA 530 Query 26832 TGAATATCTTCATAGTCAAA---TATTTTCATTTTTATT 26867 | |||||||||| | ||||| ||||| ||| ||| || Sbjct 531 TTAATATCTTCAAAATCAAATTTTATTTCCATATTTTTT 569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146569514151704