Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2779 141 8e-29 seq1592 131 1e-25 seq12857 109 5e-19 >seq2779 Length=20704 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| | || || ||| | ||||| | |||||||| || Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || ||| ||| || ||||||||||| || ||||||||||| Sbjct 8316 AGACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATCA 8257 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | || |||| | ||| ||||| || ||||||| ||||| | ||||||||| Sbjct 8256 GCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAA 8197 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| ||||||||| |||| ||||| || Sbjct 8196 TATTCAAAAGGAATCTACACTTCACTTAGTTTT 8164 >seq1592 Length=29089 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || |||||| | ||||| | ||||| ||||| Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || |||||| | |||||| || ||| |||||||||||||| ||||| ||||| Sbjct 353 GATACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 294 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| || |||||||| || || || | | | | | |||||| || Sbjct 293 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 234 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| ||||| || | |||||||| || Sbjct 233 ATTCAAAAGGAATCCACTCTGCATTTAGTTTT 202 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||||||||||||| | || || ||||||| || ||| Sbjct 869 ATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCCTCT 810 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || |||||| |||||||| || || || || || || Sbjct 809 GACACTATCGAGAACGTAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCACCTGACCAG 750 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || ||| || || || ||||| | | | | | |||||| || Sbjct 749 CAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGTCCGATTACAAT 690 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATT 24208 ||||| || ||||| || | ||| | || | ||||| Sbjct 689 ATTCAGAAGGAATCCACTCTCCATCTGGTTCTCAGATT 652 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | || || | ||||||||||| Sbjct 185 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCT 126 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | |||||| || ||| |||||||||||||| ||||| ||||| Sbjct 125 GATACGATTGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCGGATCAG 66 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 |||||| |||||| || |||||||| || || || Sbjct 65 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGA 31 >seq12857 Length=4317 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || |||||| | || || | || || ||||| Sbjct 3816 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCG 3757 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || |||||| | || || || ||| |||||||| ||||| ||||| ||||| Sbjct 3756 GATACGATCGAGAATGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 3697 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || |||||||||| || |||||||| ||||| || | | | ||||| |||||| Sbjct 3696 CAAAGACTGATTTTCGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAG--ATTATA 3639 Query 24169 ACATTCAAAAAGAATCTACAATTCAT 24194 | ||||| |||||||||||| | ||| Sbjct 3638 ATATTCAGAAAGAATCTACACTACAT 3613 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 24036 GAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGC 24095 ||||||||||| ||| || || || | |||||| || ||| |||||||||||| Sbjct 3999 GAAGTCGAGGCATCCGATACAATTGAAAATGTCAAAGCCAAAATTCAGGACAAAGAAGGC 3940 Query 24096 ATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC 24155 || ||||| |||||||||||| |||||| | || || ||||| ||||||| | | Sbjct 3939 ATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACG 3880 Query 24156 GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| || ||||| || |||||||| | |||||||| Sbjct 3879 CTTTCTGATTACAATATTCAGAAGGAATCTACTCTGCATTTAGT 3836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429743152744620