Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1592 102 7e-17 seq2779 98.7 8e-16 seq121 86.0 5e-12 seq12857 84.2 2e-11 >seq1592 Length=29089 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| |||||||| | ||||||||||| ||||| | ||| ||| | Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | || || || ||| |||||| || ||||||||| |||| ||||| Sbjct 353 GATAC-GATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCA 295 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | |||| |||||||| || | || || | ||| || ||||||| || Sbjct 294 GCAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAA 235 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || || ||| | ||| | || ||| || | || ||||| Sbjct 234 TATTCAAAAGGAATCCACTCTGCATTTAGTTTTGCGACTTCGCGGAGG 187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||||||||| | |||||||| ||||| || | || || | Sbjct 642 AATGCAGATCTTTGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCTTC 583 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | || || || ||| |||||| |||||||||||| ||||| |||| Sbjct 582 AGACAC-GATCGAGAATGTCAAAGCGAAAATTCAGGATAAAGAAGGCATCCCCCCAGATC 524 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||||||| | || | ||| || ||||| | ||||| | | || | |||| || | Sbjct 523 AGCAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGACGGCCGCACGCTTTCCGACTACA 464 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||| |||||||| ||| | || |||| Sbjct 463 ACATTCAGAAAGAGTCAACTTTGCACTTGGT 433 >seq2779 Length=20704 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA-ACGGAG-TCC 115342 |||||| || ||||| ||||| || || || ||||||||||| | ||| || || | | Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||||| | | | |||||| |||||| || |||||||| | || ||| Sbjct 8316 A--GACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGAT 8259 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||| | || |||| ||| || || || | ||||||| || ||| | |||||||| Sbjct 8258 CAGCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTAT 8199 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| || ||||| | || | || ||| || | || ||||| Sbjct 8198 AATATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGCGGAGG 8149 >seq121 Length=74473 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| |||||||| ||||| || ||||||||||| |||| || || Sbjct 8310 ATGCAGATTTTCGTCAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTAGAAGCCTCT 8251 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | | | || ||| || ||| |||||||| || | || |||||| Sbjct 8250 GATACCATCGAAAATGTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCACCAGATCAG 8191 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||||| | ||| || ||||| | ||||||| || | | ||||||||| Sbjct 8190 CAGCGACTTATCTTTGCTGGAAAACAGCTGGAAGATGGACGTACTCTCTCTGATTATAAC 8131 Query 115466 ATTCAAAAAGAGTCTACTATACATA 115490 || ||||||| ||| |||||||| Sbjct 8130 ATCCAAAAAGGTACTAGTATACATA 8106 >seq12857 Length=4317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| |||||||| | || |||||||| || || | || ||| | Sbjct 3816 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCG 3757 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | || || ||||| |||||| || ||||| ||| | || |||||| Sbjct 3756 GATAC-GATCGAGAATGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCA 3698 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||| |||| |||||||| || | || || | || || | |||||||| Sbjct 3697 GCAAAGACTGATTTTCGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAGATTATAA 3638 Query 115465 CATTCAAAAAGAGTCTACTATACAT 115489 ||||| ||||| ||||| ||||| Sbjct 3637 TATTCAGAAAGAATCTACACTACAT 3613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425153212480480