Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1592 143 3e-29 seq12857 129 6e-25 seq2779 102 8e-17 >seq1592 Length=29089 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | |||| |||||||| | || || ||||||||||| ||||||||| | Sbjct 187 CCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAC 246 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| | || || | |||||| ||||||||| Sbjct 247 AAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGG 306 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || |||| | ||| | ||||| | | ||| | Sbjct 307 ATGCCTTCTTTGTC-TTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTAC 365 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || | ||||| |||||||| ||||| Sbjct 366 TTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 134 bits (148), Expect = 1e-26 Identities = 143/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 131050 TGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAA 131109 ||||| ||||||||| || |||||| |||||| ||||||||||| ||| | || || Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 131110 CGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCAC 131168 | |||||| |||||||| || ||||||||||| ||| ||| || |||| | ||| | Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTC-TTGAATTTTGGCTTTGACATTCTCAAT 119 Query 131169 AGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAAT 131228 ||||| | | ||||| || | || | |||||||||||| ||||| || |||||||| Sbjct 120 CGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAAT 179 Query 131229 CTGCAT 131234 |||||| Sbjct 180 CTGCAT 185 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| ||||| ||||||||| || ||| || ||| || ||||| || || Sbjct 673 GTGGATTCCTTCTGAATATTGTAATCGGACAAGGTACGTCCGTCTTCAAGCTGTTTCCCG 732 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || || ||||||||||| || || || || |||||||| || ||| ||| Sbjct 733 GCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCCTCTTTGTCCTGAATCTTCGCCTTT 792 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | ||| || | || || | |||| || | ||||| || |||| || Sbjct 793 ACGTTCTCGATAGTGTCAGAGGCTTCAACTTCGAGAGTTATAGTTTTTCCAGTTAATGTC 852 Query 131218 TTTACGAAAATCTGCATG 131235 || || |||||||||||| Sbjct 853 TTCACAAAAATCTGCATG 870 >seq12857 Length=4317 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || |||||||||| || || ||||| ||||| |||||||| Sbjct 4046 CCACCACGTAGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAGAA 4105 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || || || ||||| |||| || | |||||| ||||||||| Sbjct 4106 AGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGG 4165 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| ||| || |||| | ||| | ||||| | | ||||| Sbjct 4166 ATACCTTCCTTATC-CTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGAC 4224 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||||||||| ||||| || |||||||||||||| Sbjct 4225 TTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | ||| |||||||| | || || ||||| ||||| |||||||| Sbjct 3818 CCACCACGAAGCCTCAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAA 3877 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || || || || || | || || | ||| || ||||||||| Sbjct 3878 AGCGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 3937 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || |||| | || | ||||||| | ||||| Sbjct 3938 ATGCCTTCTTTGTC-CTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGAC 3996 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| |||||||| ||||| || |||||||||||||| Sbjct 3997 TTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || | ||||| || || || || ||||| || ||||| || || || Sbjct 3601 ACGGAGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTGACAAAGTACGTCC 3660 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| ||||||||||| ||| | || | | ||||| || ||||| || || ||||| Sbjct 3661 GTCCTCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGAATGCCCTCTTT 3720 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||||| ||| | | ||| | ||||| | | ||| | || | || | Sbjct 3721 GTCTTGAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACCTCCAAAGTGAT 3780 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || | |||||| |||||||| ||||| Sbjct 3781 AGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 >seq2779 Length=20704 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | |||| ||||| || | || || ||||||||||| || |||||| Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAA 8208 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || |||||||| || || | || | ||| ||||| || ||||| Sbjct 8209 AGAGTTCTGCCA-TCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGG 8267 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||||||||||| |||||| ||| || | | ||| | || || | | |||| Sbjct 8268 AATTCCTTCTTTGTCCTGGATTTT-TGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGA 8326 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || |||||||| || || |||||||| Sbjct 8327 CTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471795650511360