Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_008184.1 Length=7866 Score E Sequences producing significant alignments: (Bits) Value seq8046 102 4e-18 >seq8046 Length=7925 Score = 102 bits (112), Expect = 4e-18 Identities = 196/281 (70%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 1945 GTAGAATTCATACCATTCCT-GATGCAGTTTAGAAAGTTTCTAAAAGGCACACCAAAAAA 2003 ||||| ||| | ||||||| | ||| || || | ||| ||||||| || || || Sbjct 4090 GTAGAGTTCGTGTCATTCCTTGCTGCCTTTAAGTCATTTT-TAAAAGGTGTGCCCAAGAA 4148 Query 2004 CAATTGCTTATGCTTTTATGGGCCCTCCAATACAGGCAAAAGCATGTTT-TGTATGAGTT 2062 |||||| || |||||||| || | ||||||||||| ||| ||| || |||||| Sbjct 4149 GAATTGCATAGTGTTTTATGGACCTGCAGATACAGGCAAAT-CATATTTCTGCATGAGTC 4207 Query 2063 TACTAGAGTTTTTAAAAGGGAGAACAATTTCATATGTGAATTCAAAAAGCCAGTTTTGGC 2122 | | |||| || || ||| ||||||| ||||| | ||||| ||||||| Sbjct 4208 TTTTGCAGTTCCTAGGTGGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGC 4267 Query 2123 TGCAGCCATTAGGGGACAGCAAAATAGGCCTGCTGGATGATGCCACACTACCTGTGTGGG 2182 ||||||| |||| ||||| || ||||| || ||||| ||||| || || ||| || Sbjct 4268 TGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGATGCGAC-GGCCCAGTGCTGG 4326 Query 2183 AC-TACATGGACGTGTACCTTAGAAACTTGCTAGATGGCAA 2222 || || || || || ||||| ||| | |||||||| || Sbjct 4327 ACGTATATTGATACATATCTTAGGAACCTACTAGATGGAAA 4367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25045625688480