Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5929 98.7 1e-15 seq532 86.0 8e-12 seq2146 82.4 1e-10 >seq5929 Length=11024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/318 (68%), Gaps = 12/318 (4%) Strand=Plus/Minus Query 62593 ACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAAT 62652 ||| |||||||||||||| | |||||| ||| | || ||| |||||| |||| | Sbjct 813 ACCAATAGGTCTATGTCTTTGATTAGAAGTTTTCGTCTCCAAAATGGGATAAAAATTGAC 754 Query 62653 ATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAG 62709 || |||| ||||| | ||| | |||| ||| |||| | || || ||||| Sbjct 753 GTCGATAACTTTATCCAAATTACGAGTGACGATT--TTTG-CAACTGTTTTAAGTTTATC 697 Query 62710 AAAATCAAA----TCGCCCATC-TATT-ACAAACATGTTCAATGCAACAGATGCCAGATT 62763 |||||| || | | || |||| |||||||| || | |||| |||||||||||| Sbjct 696 AAAATCGAAAGTCTTGTTATTCGTATTCACAAACATATTGACAGCAATAGATGCCAGATT 637 Query 62764 ACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACA 62823 ||| || || || || || | | ||||| || | || ||||| | ||| || || Sbjct 636 ACACACAGCAACTTCCCCAGGGCCAGAGTATTGAATAACTTCGGTGCACAAATTGCTGCA 577 Query 62824 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 62883 ||||| || || | | || |||||| ||| || || |||||| ||||| || Sbjct 576 TTTGATTGTACCAATGTGCTGATGATTAGATTTTCGATTGCAGTGATCCTTGTAAAGCAT 517 Query 62884 GAATGGAGTACCAGTTTC 62901 | | ||||| |||||||| Sbjct 516 GTAAGGAGTTCCAGTTTC 499 >seq532 Length=46805 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 ||||| || | ||||||||||| ||| | |||||||| ||||| | ||||| ||| || Sbjct 27589 ACTTCCTCTATGGTCCAAAATGACGCCACAGCCTTTTTGTACATGTCCCAGACATCAGGA 27530 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGG 33250 |||||||| || ||||| ||||| | |||||| Sbjct 27529 TATTGAATGGGGAAAATTACAAAGCGATTTGG 27498 >seq2146 Length=24533 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| |||||| || || || |||| || ||||| ||| ||||| || |||| ||| Sbjct 24271 CCTTCATATGACTCATAAGGACCTTTCTCGGTAGCTATTTCGCAACTGGCTTCTAGAGCA 24330 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 || ||||||| || || || || | |||| || || ||||| ||| |||||| Sbjct 24331 CCATAATAAAGAGTCTCAAAAATTTGAATATTGAGTTCACTAGCTTCTTTGCTTTCAAAT 24390 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 || || | | | ||||| || |||||||||||||| |||| ||||| Sbjct 24391 GGGTATCTCATTAAGATAAATGCATCTGCTAATCCTTGTACACTGATACC 24440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633340497598400