Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq12857 147 2e-30 seq1592 143 2e-29 seq2779 131 1e-25 >seq12857 Length=4317 Score = 147 bits (162), Expect = 2e-30 Identities = 167/222 (75%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | |||||||| |||||||| | ||||| ||| | || Sbjct 4044 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACCATCACATTGGAAGTCGAGGCATCC 3985 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| ||| ||||||||||| || || || || Sbjct 3984 GATACAATTGAAAATGTCA---AAGCCAAAATTCAG-GACAAAGAAGGCATCCCTCCGGA 3929 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | |||||||| || |||||| | ||||||| |||||| | ||||| Sbjct 3928 TCAACAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACGCTTTCTGATTA 3869 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||||||| || ||||| || || |||||||| || ||||| Sbjct 3868 CAATATTCAGAAGGAATCTACTCTGCATTTAGTTCTGAGGCT 3827 Score = 132 bits (146), Expect = 4e-26 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||||||| |||||||| | ||||| ||| | ||| Sbjct 4272 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCT 4213 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| |||| ||| || || ||||| || || || || Sbjct 4212 GATACGATAGAG--AATGTCAAAGCCAAAATTCAG-GATAAGGAAGGTATCCCTCCGGAT 4156 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| || |||||| | ||||||| |||||| | |||||| Sbjct 4155 CAGCAGAGATTGATCTTTGCAGGAAAACAACTCGAAGATGGTCGCACGCTTTCTGATTAC 4096 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || ||||| || |||||||||| || Sbjct 4095 AATATTCAGAAGGAATCAACTTTACATTTAGTTCT 4061 >seq1592 Length=29089 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| ||||| || || || ||| | || || ||||||| || | Sbjct 872 ACCATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCC 813 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||||||| | ||| | || | ||| |||||||| || ||||||||||| Sbjct 812 TCTGACACTATCGAGAACGTAAAGGCGAAGATTCAG-GACAAAGAGGGTATTCCACCTGA 754 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| ||||| ||||| | ||||| | || || || |||||| Sbjct 753 CCAGCAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGTCCGATTA 694 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| || |||||||| || ||| | || || || || | || |||| Sbjct 693 CAATATTCAGAAGGAATCCACTCTCCATCTGGTTCTCAGATTACGTGGCGGAA 641 Score = 122 bits (134), Expect = 8e-23 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| || ||| | || || | ||||| ||| | || Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || |||||| | || |||| |||| ||| ||||||||||| || || || || Sbjct 353 GATACGATCGAG--AATGTCAAAGCCAAAATTCAA-GACAAAGAAGGCATCCCTCCGGAT 297 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | ||||| || ||||| || | || || | ||||| || ||||||| Sbjct 296 CAGCAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTAC 237 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||| |||||||| || |||||||| Sbjct 236 AATATTCAAAAGGAATCCACTCTGCATTTAGT 205 Score = 114 bits (126), Expect = 1e-20 Identities = 140/188 (74%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||||||| |||||||| | ||||| ||| | ||| Sbjct 185 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCT 126 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| |||| ||| ||||||||||| ||||| || || Sbjct 125 GATACGATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAAGAAGGCATTCCTCCGGAT 69 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | ||||| || ||||| || | || || | ||||| || ||||||| Sbjct 68 CAGCAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTAC 9 Query 25176 AATATTCA 25183 |||||||| Sbjct 8 AATATTCA 1 >seq2779 Length=20704 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||||||| | || || ||| ||||||| | ||||| || | || Sbjct 8604 AATGCAGATCTTTGTAAAGACTCTCACAGGCAAAACCATCACCCTTGAAGTTGAAGCTTC 8545 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| |||||| |||||||| || ||||| || || || Sbjct 8544 AGATACCATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 8485 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || ||||||||| | ||||||| | ||| | ||||||||| Sbjct 8484 GCAGCGTCTGATTTTCGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGATTACAA 8425 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || || ||||||||||| ||| | || || | || | ||||||| Sbjct 8424 TATCCAGAAGGAATCCACGCTTCATCTGGTCCTGCGTCTTCGTGGAGGAA 8375 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | || || ||| ||||||| | || || || | ||| Sbjct 8831 ATGCAAATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTTGAGGTAGAAGCTTCT 8772 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || |||| || | ||| ||||| ||||| ||||||||||| Sbjct 8771 GACACTATAGAG--AATGTTAAAGCCAAGATTCAA-GACAAGGAAGGCATTCCACCTGAT 8715 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || |||||||| ||||| | ||||||| | ||| | ||||||| Sbjct 8714 CAGCAGCGCCTGATCTTTGCCGGAAAACAGCTGGAAGATGGCAGAACTCTTTCCGATTAC 8655 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || |||||||| || ||| | || || | || | ||||||| Sbjct 8654 AATATCCAGAAGGAATCCACACTTCATCTGGTCCTGCGTCTTCGTGGAGGAA 8603 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || ||| | || || ||| |||| || | ||||| || | || Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | || ||||||| ||||||||||| ||||| || || || Sbjct 8316 AGACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATCA 8257 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||||||||| || || | ||||||| | ||| | |||||| || Sbjct 8256 GCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAA 8197 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||| ||||| || || || ||||| Sbjct 8196 TATTCAAAAGGAATCTACACTTCACTTAGT 8167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433133631267260