Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_008297.1 Length=7801 Score E Sequences producing significant alignments: (Bits) Value seq8046 100 1e-17 >seq8046 Length=7925 Score = 100 bits (110), Expect = 1e-17 Identities = 539/852 (63%), Gaps = 16/852 (2%) Strand=Plus/Plus Query 1746 ATGGTCCAGTGGGCGTATGACAACGACCACACAGAGGAGAGCGATATAGCCTACCACTAT 1805 ||||| |||| || |||||| | ||| || || ||||||| | || | | || Sbjct 3817 ATGGTGCAGTACGCATATGACCATGACATAACGGACGAGAGCGCACTGGCATTTGAGTAC 3876 Query 1806 GCATTGCTAGCCGACGAGGACACAAATGCAGCGGCATGGCTAGGTACAAACTCACAGGCC 1865 ||| ||| || |||| |||| | ||||| || |||| ||| | |||| |||||| Sbjct 3877 GCACAGCTGGCGGACGTGGACGCCAATGCGGCAGCATTTCTAAACAGCAACTGCCAGGCC 3936 Query 1866 AAGCATGTCAGGGACTGCGCAGTGA---TGGTCAAGCATTACAGGCGTGCCATAATGTCT 1922 ||| | | | ||| || |||| || || || |||| |||||| | | Sbjct 3937 AAGTACCTAAAAGAC---GCGGTGACAATGTGCAGACACTACAAGCGTGCAGAGAGGGAA 3993 Query 1923 GCCATGAGTATGTCCGAATGGATAAACAGACGAATGGGCCTGATAGAGGAGGAAGGAGAC 1982 ||||||||| | | ||||| || || | || |||| ||||||||||| Sbjct 3994 CAAATGAGTATGAGCCAGTGGATCAAATTTAGAGGGAGCAAGATATCAGAGGAAGGAGAT 4053 Query 1983 TGGAAAAACATAGGCAATTTCCTCAGATACCAGGGTATAGAGGTTATTACATTTATAGGG 2042 ||||| |||| || || | || | ||||| ||||| | | |||| | | Sbjct 4054 TGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCATTCCTTGCT 4113 Query 2043 GCGCTGAGGGACATGTTAAAGGGCATTCCAAAAAGGACATGTAT-GTGTATAGTGGGACC 2101 || | | | | ||||| || | || || | || || || |||| | ||| ||| Sbjct 4114 GCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTATGG-ACC 4172 Query 2102 ACCAGACACAGGGAAATCAGCGTTTTGCCTTAGCCTGCTAGACTTCTTCGGGGGTAGGGT 2161 |||| ||||| |||||| || ||| | || || | | ||| | || || || Sbjct 4173 TGCAGATACAGGCAAATCATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGTGGCGCTGT 4232 Query 2162 ACTGTCATTCACCAATTACAAAAGCCAGTTCTGGCTGCAGCCACTGGCCGACACTAGAAT 2221 | | |||| |||||| || ||||| || ||||||||||| | || |||| || || Sbjct 4233 AATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACAGTAAGAT 4292 Query 2222 AGCCCTTATAGACGACGCCACCAAGTCCAC--CTGGGACTACATAGACGAATATATGAGG 2279 || || | ||||| || || | ||| |||| || || || |||| | ||| Sbjct 4293 AGGACTACTGGACGATGCGACG--GCCCAGTGCTGGACGTATATTGATACATATCTTAGG 4350 Query 2280 AACGCACTGGACGGAAACGCTATATGCGTGGACCTTAAGCATAAAAACCCTTTGCAGATT 2339 ||| ||| || |||||| | | | | ||| || ||||| | || ||||||| Sbjct 4351 AACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTGCTGCAGATA 4410 Query 2340 AGGTGTCCGCCACTGCTCATTACAAGTAATATTAACATTAAACACAACGACAGATGGCGC 2399 | ||||| ||| | | || |||| || || || | | | | ||||||||| Sbjct 4411 AAATGTCCTCCATTAATGATAACAACCAACATAAATCCTCTAGAGGAGGACAGATGGAAG 4470 Query 2400 TATCTATACAGCAGAATACATATAGTGGAATTTAAGCATGCCTTCCCCTTTAACGAGG-- 2457 ||| | ||||||| || | | || || || | || || | || || | || Sbjct 4471 TATTTGCGCAGCAGAGTA-ACACTGTTTAAGTTTACCAACCCATTTCCCTTCGCAAGCCC 4529 Query 2458 AGGGCGAGCCTGTTTACCAATTAACAAAAGGTAACTGGAAATCATTTTTCAAAAGGTTGT 2517 |||| ||||| | |||| ||| || | |||||||||| |||||| |||||| || Sbjct 4530 AGGG-GAGCCCCTATACCCTATAAATAATGCAAACTGGAAATGCTTTTTCCAAAGGTCGT 4588 Query 2518 GGTTACGATTAGACCTAAGTGATCAAGAAGACGAGGGGGAAGATGGAGAGCCTGAAAAAA 2577 ||| || ||||||||| || ||| || ||| || ||||| | ||| | Sbjct 4589 GGTCCCGCCTAGACCTAAACAGTCCAGAGGATCAGGAAGACAATGGAAACACTGGCGAGC 4648 Query 2578 CGTTTAGATGCG 2589 |||||||||||| Sbjct 4649 CGTTTAGATGCG 4660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24837711809840