Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq13651 107 7e-19 seq28566 105 3e-18 seq35391 93.3 2e-14 >seq13651 Length=3921 Score = 107 bits (118), Expect = 7e-19 Identities = 194/282 (69%), Gaps = 4/282 (1%) Strand=Plus/Minus Query 5501 AAGGCGCTGGCATGGGTGGAGAAAAACATCAAAGTGCCATTGAGCGAACCCCAGAAAGCG 5560 ||||| || | ||||| || ||| |||| || | ||| |||||| || |||| Sbjct 3297 AAGGCTCTCGACTGGGTAGACCGCAACGTCAAGGTAACGCTGACCGAACCTCAAAAAGTT 3238 Query 5561 GGGATCGCGTCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTT 5620 || ||||| ||||||||||||| ||||| || || || || || ||| | || || ||| Sbjct 3237 GGTATCGCCTCATTCTGTCCGTGGAACATCGGCCCTGGAAAATGCTTCACCTCCACCTTT 3178 Query 5621 TATAAACGAA--TTAATGCAGGTGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGA 5678 || || ||| | || || || || |||| || || || | || ||| | |||| Sbjct 3177 TACAA--GAAGCTGAACGCCGGCGACCGCATTGGTGCCTGCCGAGAAATCCGCCGCTGGA 3120 Query 5679 TTAAGGACGGTGGCAGAGACTGCCGTATTCGTTCAAACAACTGCTACGGTCAGGTATCCC 5738 | | |||| |||| |||| ||||| || || || || ||||||||||| ||| | | Sbjct 3119 TATACGACGCTGGCCGAGATTGCCGCATCCGCTCGAATAACTGCTACGGGCAGATCGTAC 3060 Query 5739 GTCGTGACCAGGAGAGCGCGCTGTCATGCTGGGGTATCGACA 5780 | || || ||||| || || | |||||||| | |||| Sbjct 3059 GGCGCGATCAGGAAGCCGAACTAGCTTGCTGGGGATTGGACA 3018 >seq28566 Length=904 Score = 105 bits (116), Expect = 3e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 56498 TATGAAGCAGCTATGGATGCTGTCAGAGAAGGATTTGATAGTTCGTCAATTAGTCGTTGC 56557 ||||| ||||| |||||||| || || || || |||||||| || ||||||||| | || Sbjct 4 TATGAGGCAGCAATGGATGCGGTTAGGGAGGGGTTTGATAGCTCATCAATTAGTAGATGT 63 Query 56558 TGTAATGGCGAAAGCTCATATCACAAAGGAAGATTCTGGCGATTTGCAAATGA 56610 || |||| |||| ||| |||||||||||| ||||||||||| ||| |||| Sbjct 64 TGCCATGGAGAAAATGCATCTCACAAAGGAAGGTTCTGGCGATTCGCATATGA 116 >seq35391 Length=557 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 59897 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 59956 ||||| ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 191 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 132 Query 59957 CCAGCAAGGGCCACCATAT 59975 ||| || ||||||||| || Sbjct 131 CCAACAGGGGCCACCAAAT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192555807169600