Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq532 125 8e-24 seq5945 122 1e-22 seq656 111 2e-19 >seq532 Length=46805 Score = 125 bits (138), Expect = 8e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || ||||| | | |||||||| |||||||| | ||| || || || || ||| Sbjct 27926 ATATAAGTTTCGATGAGTAAGGAATACATCTCAGAATGAATATTTTCTATGGCGATCTGG 27867 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || ||||||||||| | ||||||| ||| | ||| |||||| |||||||| | ||| Sbjct 27866 AAGCCGTAGAAACAACGTGCTTCCGCGATTTTCACCTCTTGACTGAATCTCTCAATCAGA 27807 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || || |||||||| || ||||| || ||||| | ||| ||||| | | Sbjct 27806 TTCTCATTAACGATTCCATCGGAAGCAGCAAAGAACGCCAAGACATGAGAGATAAAGTAT 27747 Query 93542 TTCTCATCATCTTTAAGCTTATCC 93565 | || ||| ||||| || ||| Sbjct 27746 CTTTCGTCAGAATTAAGTTTCTCC 27723 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||||||||| || | || |||||||| || | |||||| | | ||||||||||| Sbjct 28460 CTTCGTCTCGTGAGATGAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCT 28401 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||| || |||||||| ||||| ||| || || |||||||| || || || || | Sbjct 28400 TCAGCCAGAAGATTGAAGCGAAACTGCCACTGAAGAAGATACCTTCGACCGCCGCGAACG 28341 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | || | ||| || | ||| | ||| | ||||||| ||||| ||||||| || Sbjct 28340 CAACTACACGCTCAGGAAATGTAGCGCTGTCGTGATTGATCCAGTTTAATGCCCAATTGG 28281 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 | || || | ||||| || || || || || ||||| | | |||||| Sbjct 28280 CCTTCTTTCCCACGCAAGGAAGCGTCTCAATTGCATTAAACAAGAAATCTC 28230 >seq5945 Length=10991 Score = 122 bits (134), Expect = 1e-22 Identities = 83/91 (91%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 10543 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 10484 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| |||||| || || Sbjct 10483 GTTCGAACCCCACACCTGGCAAATTTTTTTT 10453 >seq656 Length=43347 Score = 111 bits (122), Expect = 2e-19 Identities = 77/85 (91%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TC-GGGAGCGTG 126325 |||||||||||| |||||||||||||||| |||||||||||||||| || ||||||||| Sbjct 36329 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATTCTGGGAGCGTG 36388 Query 126326 GGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||| | ||||| Sbjct 36389 GGTTCGAACCCCACACTTAGCAAAT 36413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556604616188960