Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq2779 111 1e-19 seq1592 89.7 4e-13 seq12857 82.4 5e-11 >seq2779 Length=20704 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || | || ||||||||||| ||| | ||| ||||| | Sbjct 8604 AATGCAGATCTTTGTAAAGACTCTCACAGGCAAAACCATCACCCTTGAAGTTGAAGCTTC 8545 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||||| || |||||||| | || | || Sbjct 8544 AGATACCATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 8485 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | || || || |||||||||||||| |||||| | |||| | |||||||||| Sbjct 8484 GCAGCGTCTGATTTTCGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGATTACAA 8425 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| ||||||||||| || |||||| |||| | ||| | || |||||| Sbjct 8424 TATCCAGAAGGAATCCACGCTTCATCTGGTCCTGCGTCTTCGTGGAGGA 8376 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| | || || |||||||| ||| | || ||||| | Sbjct 8831 ATGCAAATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTTGAGGTAGAAGCTTCT 8772 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || |||| || ||| || || || || | ||||| | Sbjct 8771 GACACTATAGAGAATGTTAAAGCCAAGATTCAAGACAAGGAAGGCATTCCACCTG---AT 8715 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | || |||||||| || ||||| || |||||| | |||| | |||||||| Sbjct 8714 CAGCAGCGCCTGATCTTTGCCGGAAAACAGCTGGAAGATGGCAGAACTCTTTCCGATTAC 8655 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| ||||||||||| || |||||| |||| | ||| | || |||||| Sbjct 8654 AATATCCAGAAGGAATCCACACTTCATCTGGTCCTGCGTCTTCGTGGAGGA 8604 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | ||||| | || |||||||||||||| | ||| ||||| | Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 21893 AGAAACGGTGGCCGATCTTAA--GCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 ||| || | | || | ||| ||||||| | || ||||| || | ||| | Sbjct 8316 AGACACCATCGA-GAACGTAAAAGCAAAAA-TCCAGGACAAAGAAGGAATTCCTCCCGAT 8259 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || | || || ||||| || || || || |||||| | |||| | ||||||| Sbjct 8258 CAGCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTAT 8199 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||||||||| ||||| | || || || | || ||||| Sbjct 8198 AATATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGCGGAGG 8149 >seq1592 Length=29089 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| || ||||| ||||| ||||| ||||| || || || Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || |||||| || ||||| || | ||| | || Sbjct 353 GATACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 294 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || || || ||||| || || || || | || || ||||||||||| Sbjct 293 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 234 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| ||||| ||| | || || || | || ||||| Sbjct 233 ATTCAAAAGGAATCCACTCTGCATTTAGTTTTGCGACTTCGCGGAGG 187 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 21826 AGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGG 21885 || ||| ||||| || ||| | || |||||||| || ||||| || || | ||| | Sbjct 877 AGAGCACCATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTG 818 Query 21886 AAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---AC 21942 ||||| | || || | | | | ||| || ||| || ||||||||| | || Sbjct 817 AAGCCTCTGACACTATCGAGAACGTAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCAC 758 Query 21943 CTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGG 22002 ||| |||| ||| | | || || || || ||||| || ||||| | || || Sbjct 757 CTG---ACCAGCAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGT 701 Query 22003 CCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||||||||||||| ||||| ||| |||| | | ||||| || ||| Sbjct 700 CCGATTACAATATTCAGAAGGAATCCACTCTCCATCTGGTTCTCAGATTACGTGGCGGA 642 >seq12857 Length=4317 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| || ||||| || | ||| | ||||||||| | || |||||||| ||| Sbjct 3960 AAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGAAAA 3901 Query 21978 CAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||||| |||||| || | | ||||||||||||||||||||||||||||| ||| Sbjct 3900 CAACTTGAAGATGGTCGCACGCTTTCTGATTACAATATTCAGAAGGAATCTACTCTGCAT 3841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357964163568616