Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq532 86.0 1e-11 >seq532 Length=46805 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 |||| || || || |||||| | || ||| | |||||||| | ||||| | |||| Sbjct 28239 TGTTTAATGCAATTGAGACGCTTCCTTGCGTGGGAAAGAAGGCCAATTGGGCATTAAACT 28298 Query 42670 GGATCGAGAGTCCCGAC---GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 ||||| | || |||| || || || ||| | | || || || | || |||| Sbjct 28299 GGATCAA---TCACGACAGCGCTACATTTCCTGAGCGTGTAGTTGCGTTCGCGGCGGTCG 28355 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCG 42785 | || ||||||||| ||| ||||| || ||||||||||| ||| | ||| ||| Sbjct 28356 AAGGTATCTTCTTCAGTGGCAGTTTCGCTTCAATCTTCTGGCTGAAGAAACGAGGAGTC- 28414 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 ||||| || ||||||||| |||||||||||| Sbjct 28415 ATGCCAGGTCTCACCTTCAGCAACGAACTCATC 28447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943904756751040