Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq23948 104 2e-17 seq28078 98.7 8e-16 seq15721 98.7 8e-16 seq1592 98.7 8e-16 seq2779 93.3 3e-14 >seq23948 Length=1359 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 242 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 301 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 302 ATAACTGATATAATGAGCCTTTTGCGGTTTC 332 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 242 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 301 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 302 ATAACTGATATAATGAGCCTTTTGCGGTTTC 332 >seq28078 Length=941 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 283 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 342 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 343 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 382 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 283 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 342 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 343 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 382 >seq15721 Length=3126 Score = 98.7 bits (108), Expect = 8e-16 Identities = 81/96 (84%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| ||||||||||| |||| |||||||||||| |||| |||| |||||||| Sbjct 262 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGTAAAGTACGATCCAAGGAACC 321 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 114427 | ||||||| || ||||||||||| ||| ||| ||| Sbjct 322 ATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 357 Score = 98.7 bits (108), Expect = 8e-16 Identities = 81/96 (84%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| ||||||||||| |||| |||||||||||| |||| |||| |||||||| Sbjct 262 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGTAAAGTACGATCCAAGGAACC 321 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 115624 | ||||||| || ||||||||||| ||| ||| ||| Sbjct 322 ATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 357 >seq1592 Length=29089 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33916 AGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCG 33975 || |||||||| || ||| ||||||||||| |||||||| | ||| || |||| Sbjct 658 AGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGACAAGGTACGTCCGTCT 717 Query 33976 TCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCC 34035 || | || || ||||| || |||| ||||||||| || || | | |||||||||| Sbjct 718 TCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCCTCTTTGTCC 777 Query 34036 ATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGT 34094 ||| || ||| | | ||| | | | |||| | ||| ||||| ||||| || Sbjct 778 TGAATCTTCGCCTTTA-CGTTCTCGATAGTGTCAGAGGCTTCAACTTCGAGAGTTATAGT 836 Query 34095 TTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||| |||| ||| |||||||| || ||||| Sbjct 837 TTTTCCAGTTAATGTCTTCACAAAAATCTGCAT 869 >seq2779 Length=20704 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || ||||| ||||||||||| ||| |||||||| || |||||||| | Sbjct 8605 CCTCCACGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGAA 8664 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| || || |||||||| ||||||||||||||||| || Sbjct 8665 AGAGTTCTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGA 8724 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || || |||| | | | | || |||| | ||| | | | |||| || ||| Sbjct 8725 ATGCCTTCCTTGT-CTTGAATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCTTCTAC 8783 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || ||||| || || || |||||||| ||||||||||| Sbjct 8784 CTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTGCAT 8831 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || ||||| ||||||||||||||| |||||||| || |||||||| | Sbjct 8377 CCTCCACGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAA 8436 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | ||| ||||| || || ||||| |||||||||||| || Sbjct 8437 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGA 8496 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | |||||||||| ||||| ||| | | |||| | || ||| | Sbjct 8497 ATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCAACT 8556 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || | || || ||||| || || || || || |||||||| |||||| Sbjct 8557 TCAAGGGTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTGCATT 8604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396884298156808