Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2779 154 3e-32 seq12857 143 6e-29 seq121 140 8e-28 seq1592 123 6e-23 seq532 89.7 1e-12 >seq2779 Length=20704 Score = 154 bits (170), Expect = 3e-32 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || ||||||| |||| ||| || |||||||| || |||| Sbjct 8376 TCCTCCACGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGA 8435 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | || ||||| | |||||| || ||||| ||||||||||| || ||| || Sbjct 8436 AAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTG---ATCCGG 8492 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||| ||||| ||||||||||| || ||||| |||||||| | ||| | ||| Sbjct 8493 GGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTC 8552 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| || || || || |||||||| || || ||||||||| Sbjct 8553 AACTTCAAGGGTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTGCATT 8604 Score = 105 bits (116), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| |||||||| |||| || || | || ||||| | || || || || || Sbjct 8184 TTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAA 8243 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || ||||| || ||| || ||||||||||| ||||||||||| ||||| ||||| Sbjct 8244 AATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTTACGTT 8303 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || | ||| ||||| || || || || || || || ||||| || || Sbjct 8304 CTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCAC 8363 Query 288462 GAATATCTGCATT 288474 || ||||||||| Sbjct 8364 AAAGATCTGCATT 8376 >seq12857 Length=4317 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || | ||| | || ||| || || ||||| || || | Sbjct 3818 CCACCACGAAGCCTCAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAA 3877 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || ||||| | ||||||||| || || |||| | ||||||| ||| Sbjct 3878 AGCGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 3937 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| ||||| ||||| ||||| || ||||| || | |||| | || ||| Sbjct 3938 ATGCCTTCTTTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGACT 3997 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 3998 TCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||| | || ||| || || ||||| || || | Sbjct 4046 CCACCACGTAGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAGAA 4105 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || ||||| | |||||||||||| ||||||| | ||| ||| ||| Sbjct 4106 AGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGG 4165 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| |||||||| ||||| ||||| || || ||||| | ||| | || ||| Sbjct 4166 ATACCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGACT 4225 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || ||||| |||||||||||||| |||||||| Sbjct 4226 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 >seq121 Length=74473 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||||||||| ||||| || | ||| || ||||| ||||| | |||||||| || |||| Sbjct 8121 CTTTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAGCAAAGA 8180 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | || ||||| ||| ||| ||||| ||||||||||| || || |||||||| |||| Sbjct 8181 TAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTT 8240 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| | |||||| ||||| || || || || || || || || ||||||| Sbjct 8241 CGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTGACGA 8300 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 8301 AAATCTGCAT 8310 >seq1592 Length=29089 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||||| |||||||| |||||||| | |||||||| || ||| Sbjct 451 TCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAG 510 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | || ||| |||||| || |||||||||||||| ||||||||||| || Sbjct 511 ATCAATCTTTGCTGA---TCTGGGGGGATGCCTTCTTTATCCTGAATTTTCGCTTTGACA 567 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | ||| || || | ||||| ||||| || |||| || ||| Sbjct 568 TTCTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTG 627 Query 288460 ACGAATATCTGCATT 288474 || || ||||||||| Sbjct 628 ACAAAGATCTGCATT 642 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || | ||| || || ||||| | ||| ||| || || ||||| || |||| Sbjct 642 TCCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGA 701 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || ||||||||||| | ||||| || ||||| |||| ||||| || | ||| Sbjct 702 CAAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGG 761 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || ||||| ||||| || ||||| || ||||| || |||| || | ||| || Sbjct 762 AATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAAC 821 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| || || || || || || | ||||| || || |||||||| Sbjct 822 TTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCAT 869 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| || |||| | ||||||||||| || | || || || ||||| |||| Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 | ||| ||| || || |||||||| || || ||||| ||||| || || || || Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATC 120 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | ||| | || ||||| | ||||| || || ||||| |||||||||||||| ||| Sbjct 121 GTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATC 180 Query 288469 TGCAT 288473 ||||| Sbjct 181 TGCAT 185 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| | || | ||| | ||| ||| ||||| ||||| || |||| Sbjct 187 CCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAC 246 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||||||||| || | || || || ||||| |||| | ||| ||| ||| Sbjct 247 AAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGG 306 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || || ||||| ||||| || || || || | ||| | |||||| Sbjct 307 ATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACT 366 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || |||| || |||||||| || ||||| Sbjct 367 TCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 >seq532 Length=46805 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 268462 TTTCCCATTCAATATCATGATCTGTGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGG 268521 || ||||||||||||| |||| | ||| |||||||||| ||||| ||||| | |||||| Sbjct 27516 TTCCCCATTCAATATCCTGATGTCTGGGACATGTACAAAAAGGCTGTGGCGTCATTTTGG 27575 Query 268522 ACCACCGAGGAAGTTCCTCTTAAC 268545 |||| |||||||| |||||| || Sbjct 27576 ACCATAGAGGAAGTACCTCTTCAC 27599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179098132493112