Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_010226.1 Length=7742 Score E Sequences producing significant alignments: (Bits) Value seq8046 158 6e-35 >seq8046 Length=7925 Score = 158 bits (174), Expect = 6e-35 Identities = 568/873 (65%), Gaps = 24/873 (3%) Strand=Plus/Plus Query 1813 AGTTCACATTAGCCACCATGGTGCAGTGGGCCTATGACAATGACCACACAGAGGAAAGCG 1872 |||||| |||| | ||||||||||| || |||||| ||||| || || || |||| Sbjct 3800 AGTTCAAATTATCTGTCATGGTGCAGTACGCATATGACCATGACATAACGGACGAGAGCG 3859 Query 1873 ACATTGCATACCACTACGCACTCCTGGCCGATGTTGATGCAAATGCAGCAGCATGGCTAA 1932 | |||| | ||||||| ||||| || || || || ||||| ||||||| |||| Sbjct 3860 CACTGGCATTTGAGTACGCACAGCTGGCGGACGTGGACGCCAATGCGGCAGCATTTCTAA 3919 Query 1933 ACACAAATTCCCAGGCTAAACACCTAAAGGACTGTGCAACCATGGTCAGACACTATAAGA 1992 ||| || | |||||| || ||||||| ||| | || ||| ||||||||| ||| Sbjct 3920 ACAGCAACTGCCAGGCCAAGTACCTAAAAGACGCGGTGACAATGTGCAGACACTACAAGC 3979 Query 1993 GAGCAATAATGTCATCCCTGACGATGTCCGAGTGGATACACCGAAGAATACAGGGT---- 2048 | ||| | | | ||| ||| | ||||||| || || |||| Sbjct 3980 GTGCAGAGAGGGAACAAATGAGTATGAGCCAGTGGATC-----AAATTTAGAGGGAGCAA 4034 Query 2049 -ATAGACGAGGAGGGTGACTGGAAAGAAATCGGGAACTTTCTTAGATATCAGCATGTTGA 2107 ||| ||||| || || ||||| || | || ||| | || ||||| || || Sbjct 4035 GATATCAGAGGAAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGA 4094 Query 2108 GGTGATTGCATTTCTGGGAGCCCTTAGAGATATGCTGAAAAGAA-TACCCaaaaaaaCAT 2166 | | | |||| || | ||| ||| || || | ||||| | ||||| || | | Sbjct 4095 GTTCGTGTCATTCCTTGCTGCCTTTA-AGTCATTTTTAAAAGGTGTGCCCAAGAAGAATT 4153 Query 2167 GCATATGTATTGTA-GGACCCCCCAACACAGGGAAGTCAGCCTTCTGCCTAAGTTTGCTG 2225 ||||| || || || ||||| | | ||||| || ||| |||||| | ||| | || Sbjct 4154 GCATA-GTGTTTTATGGACCTGCAGATACAGGCAAATCATATTTCTGCATGAGTCTTTTG 4212 Query 2226 GATTTCTTTGGGGGAAAGGTGATATCATTCACGAATTACAAGAGCCAGTTCTGGCTAATG 2285 | ||| | || || || ||||||| | |||| || ||||| || ||||| | Sbjct 4213 CAGTTCCTAGGTGGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAG 4272 Query 2286 CCACTGGCAGACACCAGGCTAGCACTGTTAGACGATGCGACACGACACACATG--GGAC- 2342 || | || |||| | | ||| ||| | ||||||||||| | | || || |||| Sbjct 4273 CCCTTAGCTGACAGTAAGATAGGACTACTGGACGATGCGAC--GGCCCAG-TGCTGGACG 4329 Query 2343 TACATGGACGAATATATGCGAAACGCGCTGGACGGGAACCAGATATGTCTGGACCTAAAA 2402 || || || |||| | | ||| || || || |||| | || | ||| ||| Sbjct 4330 TATATTGATACATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAA 4389 Query 2403 CACAGGGCCCCGCTGCAGATCAGGTGTCCGCCATTATTGGTGACTAGCAATATAGATATA 2462 || | | ||| ||||||||| | ||||| |||||| || | || | ||| ||| || Sbjct 4390 CATAAGACCCTGCTGCAGATAAAATGTCCTCCATTAATGATAACAACCAACATAAATCCT 4449 Query 2463 CGGAAGGAAGACAGGTGGCGCTACCTAGTAAGCAGAGTATATGTTGTTGAA-TTTAAAAG 2521 | |||| ||||| ||| || | ||||||||| | |||| || |||| | Sbjct 4450 CTAGAGGAGGACAGATGGAAGTATTTGCGCAGCAGAGTA-ACACTGTTTAAGTTTACCAA 4508 Query 2522 CGCCTTTCCCTTTA-ATGAAAATGGGGAGCCTGTGTATCAACTAACCAAAGTAAATTGGA 2580 | | |||||||| | | | |||||||| | || | ||| || | ||| |||| Sbjct 4509 CCCATTTCCCTTCGCAAGCCCA-GGGGAGCCCCTATACCCTATAAATAATGCAAACTGGA 4567 Query 2581 AATCCTTTTTTACAAGGTTGTGGTCACGTTTAGACCTAAGTGATCAAGAGGACGAGGGGG 2640 ||| |||||| ||||| |||||| || ||||||||| || |||||| ||| | Sbjct 4568 AATGCTTTTTCCAAAGGTCGTGGTCCCGCCTAGACCTAAACAGTCCAGAGGATCAGGAAG 4627 Query 2641 AAGATGGAGACCCTGAAAAAACGTTTAGATGCG 2673 | ||||| || ||| | |||||||||||| Sbjct 4628 ACAATGGAAACACTGGCGAGCCGTTTAGATGCG 4660 Score = 98.7 bits (108), Expect = 5e-17 Identities = 173/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 6335 GGCGAGTGCCCCCCTATTGAGCTGAAAAACACGGTGATTCAGGATGGGGATATGATTGAT 6394 || || || || || || || | | |||||| ||| |||||||||||||| |||| Sbjct 376 GGTGACTGTCCTCCCCTTCAGTTTACAAACACCACTATTGAGGATGGGGATATGGTTGAA 435 Query 6395 ATTGGCTACGGAGCTATGGATTTT--CGGTC-ACTGTCCCAAAACAAGTCGGATGCGCCC 6451 | || | ||| || |||||||| || || || |||| ||||| || |||| ||| Sbjct 436 ACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAGTCC---AACAAATCTGATGTCCCC 492 Query 6452 TTGGACATTGTTAGGTCCATATGTAAATACCCTGACTATCTCAAAATGGCTAAGGAGGCT 6511 |||| ||| || |||||||||||| || |||||||| ||||||||| || | Sbjct 493 CTGGATATTTGTACTAACATATGTAAATATCCGGACTATCTGAAAATGGCTGCTGACCCC 552 Query 6512 ACGGGTGATTCTATGT--TTTTCTTTGCACGTCGCGAGCAATTGTACACACGTCACTTTT 6569 || |||||||||| ||||| || || | ||||| ||| ||| || || |||| Sbjct 553 TATGGCGATTCTATGTTCTTTTCCCTG--CGCAGGGAGCAGATGTTCACCCGGCATTTTT 610 Query 6570 TCAGTCG 6576 | | ||| Sbjct 611 TTAATCG 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24648989981536