Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1592 140 3e-28 seq12857 134 1e-26 seq2779 132 5e-26 >seq1592 Length=29089 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || | |||| ||| | || ||||| |||||||| |||||||| | Sbjct 186 ACCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGA 245 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || ||||||||||| || |||| | | |||||| || ||||| Sbjct 246 CAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGG 305 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || |||||||| ||||| | |||| ||||| ||| ||| | ||||| || || | Sbjct 306 GATGCCTTCTTTGTCTTG-AATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTA 364 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | || || || ||||| ||||| |||||||||||||| Sbjct 365 CTTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || ||||| || || ||||| | || ||||| || ||||| |||||||| | Sbjct 643 CCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGAC 702 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || ||||||||||||| || ||||| |||| | ||||||||||| || ||| Sbjct 703 AAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGA 762 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| || || || || |||||| ||| | || ||| ||| || ||| Sbjct 763 ATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAACT 822 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||||| || || || || || || || || ||||| ||||| Sbjct 823 TCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCAT 869 Score = 122 bits (134), Expect = 9e-23 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 64259 TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGC 64318 ||||| |||||||| | | |||||| |||| || ||||||||||| || |||| | Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCAC 64377 | |||||| || |||||||| |||||||| ||||| | |||| ||||| ||| ||| | Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTG-AATTTTGGCTTTGACATTCTCAAT 119 Query 64378 TGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAAT 64437 |||||| || || ||||| | || | ||| || ||||| | ||| || |||||||| Sbjct 120 CGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAAT 179 Query 64438 TTGCAT 64443 ||||| Sbjct 180 CTGCAT 185 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| ||||||||||| || | | ||||| ||||||||||||| || || Sbjct 445 GTTGACTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCA 504 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | ||||| || || || || |||||||| || || | |||| ||||| Sbjct 505 GCAAAGATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCCTG-AATTTTCGCTTT 563 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || || || || || || | || | |||||| || ||||| || Sbjct 564 GACATTCTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAAGGT 623 Query 64426 TTTTACGAAAATTTGCATT 64444 ||| || || || |||||| Sbjct 624 TTTGACAAAGATCTGCATT 642 >seq12857 Length=4317 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||| ||||| || ||||||| | || || |||| Sbjct 3605 AGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTGACAAAGTACGTCCGTCC 3664 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| || | ||||| || |||||||| || ||||| ||| Sbjct 3665 TCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGAATGCCCTCTTTGTCT 3724 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||||||| ||| | ||||| || || || || | ||| | || Sbjct 3725 TGAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACCTCCAAAGTGATAGTT 3784 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||||||||| |||||||||||||| Sbjct 3785 TTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 >seq2779 Length=20704 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | || | |||| |||| || ||||| |||||||| || ||||| | Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAA 8208 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| |||||||| |||||| ||||||| || ||||| ||||||||| Sbjct 8209 AGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGA 8268 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| || || |||||| ||||| ||| | || || || || ||| Sbjct 8269 ATTCCTTCTTTGTCCTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACT 8328 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | ||| ||||| || | |||||| || || || |||||| Sbjct 8329 TCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCATT 8376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499414938409760