Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_010739.1 Length=7582 Score E Sequences producing significant alignments: (Bits) Value seq8046 154 7e-34 >seq8046 Length=7925 Score = 154 bits (170), Expect = 7e-34 Identities = 629/975 (65%), Gaps = 45/975 (5%) Strand=Plus/Plus Query 5645 CTGTACCTAAGGTATCCGCAAATCAATATAGAGTGTTTAGAATTAAGTTGCCTGACCCAA 5704 ||||||| |||||||| | | || || | ||||| | ||| |||| ||||| | Sbjct 20 CTGTACCCAAGGTATCGGGCTACCAGTACCGTGTGTTCCATGTAAAGCTGCCGGACCCCA 79 Query 5705 ATAGGTTTGGCCTACCCGACAATACAATTTACAACCCTGATAAGGAGCGCCTCGTGTGGA 5764 ||| |||||| || || || | | || | || || | |||| || ||||| Sbjct 80 ATAAGTTTGGTCTGCCTGATGCCAACCTCTATGATCCCGACACCCAGCGTCTGCTGTGGG 139 Query 5765 CC-GTGCTCGGTATTGAGGTGGGCCGAGGTCAACCGCTGGGTGTAGGACTCAGTGGCAAC 5823 || ||| |||| |||||||||| || || || || |||||||| || | || || Sbjct 140 CCTGTG-TCGGAGTTGAGGTGGGTCGTGGCCAGCCTCTGGGTGTGGGGATATCCGGTCAC 198 Query 5824 CCTCTGTTTAACAAAAATGAGGATAATGAAAATCCCACAAAATACAATGGCAATGTGGCT 5883 ||| | ||||| | || |||| ||||||| | | ||||| | | ||| Sbjct 199 CCTTACTATAACAGACTGGATGATACTGAAAATGC------ACACAATCCCGACACAGCT 252 Query 5884 ACCGATACCCGACAGAACGTGGCCATTGACAATAAGCAAACCCAACTGTTTTTCCTTGGC 5943 ||| | |||| | |||| || |||| || || || |||||| | | || Sbjct 253 GATGATGGGAGGGAGAATATATCCATGGATTATAAACAGACACAGCTGTTTATTTTGGGA 312 Query 5944 TGCCACCCTCCCTTGGGGGAGCACTGGGCCAAGGGTCTCACCTGCGACGGTGTACAGGTT 6003 ||| | ||||| | || || || ||| ||||||| |||||| ||| || || | Sbjct 313 TGCAAGCCTCCTATAGGTGAACATTGGTCCAAGGGCACTACCTGCAGCGG-GT-CATCTG 370 Query 6004 CAGCCTGGTGACTGTCCCCCTCTAGAGCTTGTGAATTCCGTCATAGAGGATGGTGACATG 6063 | | |||||||||||| || || || || || || || |||||||| || ||| Sbjct 371 CTGT-TGGTGACTGTCCTCCCCTTCAGTTTACAAACACCACTATTGAGGATGGGGATATG 429 Query 6064 ATTGACACTGGCTTTGGTGCCATGGATTTTAAGGTGTTGCAGGAAAACAAATCTGACACC 6123 |||| || || || || ||| |||||||| | | ||| ||||||||||| | Sbjct 430 GTTGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAGTCCAACAAATCTGATGTC 489 Query 6124 CCTCTTGACATTTCCAACAGCATTTGCAAATACCCTGACTACCTAAAGATGGCCTCTGAT 6183 || || || |||| | | ||| || ||||| || ||||| || || ||||| |||| Sbjct 490 CCCCTGGATATTTGTACTAACATATGTAAATATCCGGACTATCTGAAAATGGCTGCTGAC 549 Query 6184 AAATATGGGGACTCT-TGCT-TTTTCTTTGTG-AGGAAAGAGCAGCTGTTTGCAAGACAT 6240 ||||| || ||| || | ||||| || | ||| |||||| |||| | | ||| Sbjct 550 CCCTATGGCGATTCTATGTTCTTTTCCCTGCGCAGG---GAGCAGATGTTCACCCGGCAT 606 Query 6241 TATTTTAGTAGGTCTGGCACTGTAGGTGAAAGTGTGCCTGATGACATGCTGT---TCAAA 6297 | ||||| | || ||| | | ||||| | || || || ||| | ||||| Sbjct 607 TTTTTTAATCGGGGTGGGTCGATGGGTGACGCCCTCCCGGAGGA---GCTATATGTCAAA 663 Query 6298 GCCGCCCAGGACCAAAATCAAAACACAGTAGGCAGTACAGTTTACTATGCTACCCCCAGT 6357 || | | || | || | || ||| |||||| | || |||||| Sbjct 664 -------AGTTCTACCGTCCAGACCC--CCGGTAGTTATGTTTACACCTCCACTCCCAGT 714 Query 6358 GGCTCCATGGTGTCTAGCGATGGCCAAATATTTAATAGGCCATACTGGATTCAAAAGGCA 6417 ||||| ||||| || || || ||||||| | ||| |||||| | | || ||| Sbjct 715 GGCTCTATGGTATCCTCTGAACAGCAGTTATTTAACAAGCCTTACTGGCTGCGAAGGGCC 774 Query 6418 CAGGGACACAATAATGGTGTGTGCTGGAACAATGAAATGTTTTTAACTGTGGTGGACAAC 6477 |||||||| || ||||| |||||||| |||| | || | || |||||||||| | Sbjct 775 CAGGGACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAGTGGTGGACACC 834 Query 6478 ACACGCAGTACAAACATGACCCTCTCAGTAGAAGCCACT-AAGGAACAGACA-----TAC 6531 || ||||| |||| ||| | || | || |||||| | ||||| | || Sbjct 835 ACGCGCAGCACAA--ATGTCTCTTTGTGT----GCCACTGTAAACACAGAAACTAATTAT 888 Query 6532 AAGGCTAGCAATTTTAAAACATATCTTAGGCATTGTGAAGAATATGACGTGCAGCTTATC 6591 ||||| ||||| ||| ||| ||||||||| || || ||||| ||||| | || Sbjct 889 AAGGCCTCCAATTATAAGGAATACCTTAGGCATATGGAGGAGTATGATTTGCAGTTCATT 948 Query 6592 ATGCAACT-TGCAAA 6605 | ||||| |||||| Sbjct 949 TTTCAACTGTGCAAA 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24137201972576