Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_011109.1 Length=8089 Score E Sequences producing significant alignments: (Bits) Value seq8046 122 4e-24 >seq8046 Length=7925 Score = 122 bits (134), Expect = 4e-24 Identities = 368/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 2027 AGGCACTACAAAAAAGCTGAAATGGATAAAATGAGTATAGGACAGTGGATAAAGCATAGA 2086 || |||||||| || || | ||| |||||||||| | |||||||| || |||| Sbjct 3967 AGACACTACAAGCGTGCAGAGAGGGAACAAATGAGTATGAGCCAGTGGATCAAATTTAGA 4026 Query 2087 TGTGAGAAA-ATTGCAGGAGATGGAGATTGGAGACCTATTATGAAGTTTTTAAAGTATCA 2145 | ||| || || ||| || |||||||||| ||||| | |||||||||| | |||| Sbjct 4027 GG-GAGCAAGATATCAGAGGAAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCA 4085 Query 2146 CTCAGTAGAAATAATGCCATTT-TTAATGTTCTTTAGACGGTTCTTGAAAGGAATACCAA 2204 ||||| | || |||| || || || || | || || ||||| | || | Sbjct 4086 GGGGGTAGAGTTCGTGTCATTCCTTGCTGCCTTTAAGTCATTT-TTAAAAGGTGTGCCCA 4144 Query 2205 AAAGTAACTGTTTAGTTTTATATGGACCTGCAAACTCAGGAAAGTCATACTT-TGCAATG 2263 | | || || |||| || |||||||||||| | |||| || ||||| || ||| ||| Sbjct 4145 AGAAGAATTGCATAGTGTTTTATGGACCTGCAGATACAGGCAAATCATATTTCTGC-ATG 4203 Query 2264 AGCTTAATTAACATGTTAGGTGGAAAAGTAATTTCACATGTAAATGCAAAGAGTCACTTT 2323 || | | | | ||||||| ||||| ||| ||| ||| | | || |||||| Sbjct 4204 AGTCTTTTGCAGTTCCTAGGTGGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTT 4263 Query 2324 TGGTTGCAGCCATTAGCAGATGGTAAAATAGCCTTGTTAGATGATGCAAC-ACCAAGCAC 2382 ||| ||||||| ||||| || |||| |||| | | || ||||| || || || | Sbjct 4264 TGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGATGCGACGGCCCAGTGC 4323 Query 2383 ATGGGATTATATGGACACCTTTTTGAGAAATTTGTTAGATGGAAATACAATTTCTTTAGA 2442 ||| ||||| || || | | | || || | |||||||||| | | | |||| Sbjct 4324 -TGGACGTATATTGATACATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGA 4382 Query 2443 TACAAAGCATAAGGCACCTTTACAAATTAGGAGTCCCCCTTTGATTGTTACCACAAATTA 2502 | || |||||| | | | || || | |||| || || || | || || || Sbjct 4383 CAGGAAACATAAGACCCTGCTGCAGATAAAATGTCCTCCATTAATGATAACAACCAACAT 4442 Query 2503 TAATGTTTTAGAGAATGAAAAGTGGAAGTATTTGCATAGTAGAATAAAGCAGATTAGCTT 2562 ||| | ||||| | || | ||||||||||||| || ||| ||| | | ||| || Sbjct 4443 AAATCCTCTAGAGGAGGACAGATGGAAGTATTTGCGCAGCAGAGTAACACTGTTTAAGTT 4502 Query 2563 TTTAAACCCATGTCCATT 2580 | ||||||| ||| || Sbjct 4503 TACCAACCCATTTCCCTT 4520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25758930225968