Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_011280.1 Length=7260 Score E Sequences producing significant alignments: (Bits) Value seq8046 279 2e-71 >seq8046 Length=7925 Score = 279 bits (308), Expect = 2e-71 Identities = 738/1102 (67%), Gaps = 60/1102 (5%) Strand=Plus/Plus Query 5393 GTCCCCAAGGTGTCCTCGAATCAGTACCGTGTTTTCAGGATCTCA--CTGCCTGACCCTA 5450 || |||||||| || | ||||||||||| ||| || | | ||||| ||||| | Sbjct 22 GTACCCAAGGTATCGGGCTACCAGTACCGTGTGTTCC--ATGTAAAGCTGCCGGACCCCA 79 Query 5451 ATAAGTTTGGCCTGCCAGATTCTGATCTATATGATCCTGAGAAGGAGAGGCTGGTATGGG 5510 |||||||||| ||||| ||| | | || |||||||| || | || | ||| | |||| Sbjct 80 ATAAGTTTGGTCTGCCTGATGCCAACCTCTATGATCCCGACACCCAGCGTCTGCTGTGGG 139 Query 5511 CCTGTACCGGCATTGAGGTGGGCCGGGGCCAGCCATTGGGTATAGGGCTCAGCGGTCATC 5570 ||||| ||| |||||||||| || |||||||| ||||| | ||| | |||||| | Sbjct 140 CCTGTGTCGGAGTTGAGGTGGGTCGTGGCCAGCCTCTGGGTGTGGGGATATCCGGTCACC 199 Query 5571 C--ACTGTTCAATAGATTTGATGACACTGAGAACCCAGGGAAATATAATACCGCATTCCC 5628 | ||| | || ||| | ||||| ||||| || || | ||| ||| | | Sbjct 200 CTTACTAT--AACAGACTGGATGATACTGAAAATGCAC------ACAATCCCGA---CAC 248 Query 5629 AGGAACAGATAAT---AGGCAGAATGTGTCCATGGATAATAAACAAACACAAATGTTCAT 5685 || | ||| || ||| ||||| | ||||||||| ||||||| ||||| |||| || Sbjct 249 AG---CTGATGATGGGAGGGAGAATATATCCATGGATTATAAACAGACACAGCTGTTTAT 305 Query 5686 GTTAGGCTGCACACCTCCCCTGGGCGAGCACTGGGGCAAGGCC-CTACGCTGTGAGACTG 5744 || || |||| ||||| | || || || ||| ||||| | |||| ||| | | Sbjct 306 TTTGGGATGCAAGCCTCCTATAGGTGAACATTGGTCCAAGGGCACTAC-CTGC---AGCG 361 Query 5745 ACCCCCCTGCGCAGGCTGGGGACTGTCCGCCCATAGAATTGGT---CACCTCTGTAATTG 5801 | |||| | ||| |||||||| ||| | | || |||| || |||| Sbjct 362 GGTCATCTGCT---GTTGGTGACTGTCCTCCCCTTCAGTTTACAAACACCACT---ATTG 415 Query 5802 AGGATGGTGACATGATAGACACGGGATTTGGTAACATGGACTTCAGGACGCTGCAGGAGA 5861 ||||||| || ||| | || || || || || | |||| || | || ||| | Sbjct 416 AGGATGGGGATATGGTTGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAGTCCA 475 Query 5862 ATAAGTCCGATGTCCCTCTTGACATCAGTCAGTCCGTGTGCAAATACCCTGACTATCTCA 5921 | || || |||||||| || || || || | | || ||||| || |||||||| | Sbjct 476 ACAAATCTGATGTCCCCCTGGATATTTGTACTAACATATGTAAATATCCGGACTATCTGA 535 Query 5922 AAATGACCTCTGATCCGCATGGGAACTCTTTGTTCTTCCTTATCAGGAGGGAGCAAATGT 5981 ||||| | |||| || |||| | ||| ||||||| | | |||||||| |||| Sbjct 536 AAATGGCTGCTGACCCCTATGGCGATTCTATGTTCTTTTCCCTGCGCAGGGAGCAGATGT 595 Query 5982 TCACCCGCCATTTCTTCAGCAGGGCCGGTGTTG-TGGGGGAGCAGGTGCCTGAT-AGTCT 6039 ||||||| ||||| || | ||| || || | |||| || | || || || Sbjct 596 TCACCCGGCATTTTTTTAATCGGGGTGG-GTCGATGGGTGACGCCCTCCCGGAGGAG--- 651 Query 6040 TCTATTCAAGGCAGATGGTGGGCAGAACCAGAACACACTGTCAACCTCTGTGTACACACC 6099 |||| | | || | | | | | ||||| | | | || | | ||| ||||| | Sbjct 652 -CTAT--ATGTCAAAAGTTCTACCGT-CCAGACCCC-CGGT--AGTTATGTTTACACCTC 704 Query 6100 CACTCCCAGTGGTTCCCTTGTTTCCAGTGACACA-CAGATTTTCAATAGGCCTTACTGGC 6158 |||||||||||| || | || ||| ||| ||| ||| | || || | ||||||||||| Sbjct 705 CACTCCCAGTGGCTCTATGGTATCCTCTGA-ACAGCAGTTATTTAACAAGCCTTACTGGC 763 Query 6159 TCTCCAGGGCACAGGGGAATAATAATGGTATCTGCTGGGACAATCAGCTATTCCTGACCG 6218 | ||||| ||||| |||| ||||| || ||||||| ||||| | | |||||||| | Sbjct 764 TGCGAAGGGCCCAGGGACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAG 823 Query 6219 TGGTGGATACCACGCGTAGCACTAACTTCACCTTGT---CCATTG-CAACACAGTCCAAT 6274 ||||||| |||||||| ||||| || || | |||| ||| || ||||||| | Sbjct 824 TGGTGGACACCACGCGCAGCACAAATGTCTCTTTGTGTGCCACTGTAAACACAG----AA 879 Query 6275 GCCACCTACAATGCCGGCAATTTCAAGCAATATATGAGGCATGTGGAGGAGTTTGACCTG 6334 | | || || ||| ||||| ||| |||| | |||||| ||||||||| ||| || Sbjct 880 ACTAATTATAAGGCCTCCAATTATAAGGAATACCTTAGGCATATGGAGGAGTATGATTTG 939 Query 6335 CAGTTTATCTTTCAGCTCTGCAAGGTTAGCCTTACCCCTGAGGTCCTCGCCTATTTGCAT 6394 ||||| || ||||| || ||||| | | |||||||| ||| | | || || | ||| Sbjct 940 CAGTTCATTTTTCAACTGTGCAAAATAACACTTACCCCCGAGATAATGGCATACATACAT 999 Query 6395 ACTATGGATCCTGATGTACTGGACAACTGGAACCTGGGCCTGTCCCTTCCTACGGCCGCG 6454 | |||||| | | || || |||||||| | || | ||| || || |||| Sbjct 1000 AACATGGATGCGCGGTTGCTTGAGGACTGGAACTTTGGTGTACCCCCGCCCCCGTCCGCC 1059 Query 6455 AGTGTTGAGGACACTTATAGGT 6476 || | | ||||| || |||| Sbjct 1060 AGCTTGCAAGACACCTACAGGT 1081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23107228604544