Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2779 107 2e-18 seq12857 93.3 4e-14 seq7160 89.7 5e-13 seq1592 86.0 6e-12 >seq2779 Length=20704 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGA 138458 ||||||||||| || | | || ||||||||||| || || ||| | ||| | || | Sbjct 8161 CGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCA 8220 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 || || || || ||||||| | | || ||||| || || || ||||| || |||||||| Sbjct 8221 -TCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTT 8279 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||||||| ||||| | || | |||||| | | || || || | || | Sbjct 8280 GTCCTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAAT 8339 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || || |||||||| ||||| |||||||| Sbjct 8340 GGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 >seq12857 Length=4317 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||||||||||| |||| ||||| ||||| ||||| || Sbjct 4046 CCACCACGTAGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAGAA 4105 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||||||||| || | | |||| | | ||| || |||||||| Sbjct 4106 AGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGG 4165 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| |||| | ||| | | || | || || | | ||| || Sbjct 4166 ATACCTTCCTTATC-CTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGAC 4224 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || ||||| || || ||||||||||| Sbjct 4225 TTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 || ||||||||| | | || ||||| ||||| ||||| || | || || || Sbjct 3832 CAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATC 3891 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || |||||||| || | | | || | | |||||| |||||||| || ||||||||||| Sbjct 3892 TTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATGCCTTCTTTGTC 3951 Query 138522 GGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| |||| | ||| | | ||| | || |||| | ||| || || | || | | Sbjct 3952 -CTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGACTTCCAATGTGATGG 4010 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || ||||| || || ||||||||||| Sbjct 4011 TCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 >seq7160 Length=9074 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/209 (71%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 22673 AGACCGCCGTCACAGCCCATGTCGACATGGTCGCAATCGACCAGCTGCTGCTCCGACAAA 22732 ||||||||| |||||| || | || |||||| || || || | |||||| |||| | Sbjct 4467 AGACCGCCGCTACAGCCTTCATCCAGATCGTCGCAGTCAACGAGTTCCTGCTCGGACAGA 4526 Query 22733 TCGATAAGGCGATCGTACTTGATCGCGTACTGACTCTCGAGCGCGCCC-AGACCGGCAAA 22791 | || | ||| ||||||||||||||| | |||| |||| |||| | || Sbjct 4527 GACAGCAGCTGGCCGTGCTTGATCGCGTACTGGCCTTCGACGTTGCCCGTGACC-GAGAA 4585 Query 22792 AGCCCAACAGGCGCCGCACATGCCCTGATCTTTCACCGACGTGACTTTG-TTGAGGGTGC 22850 ||||| |||| ||||||||| |||||||| ||||||| || || || | || | Sbjct 4586 GGCCCAGCAGGAGCCGCACATACCCTGATCCTTCACCGGAGTCACGGTGCCTTTCTGT-C 4644 Query 22851 GCCAATCGAAGCTGGTCGGCCGCT-GACG 22878 |||| |||||||||| ||| ||| |||| Sbjct 4645 GCCAGTCGAAGCTGGGTGGCAGCTCGACG 4673 >seq1592 Length=29089 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||||||||| | | || ||||||||||| ||||| ||| || || || | Sbjct 199 CGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGTCCG 258 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| || || || || | | || | | ||| || |||||||| || ||||||||| Sbjct 259 TCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTG 318 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||| | | || | || || | | ||| || || | || | Sbjct 319 TC-TTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAAT 377 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || |||| ||||| || ||||| ||||| Sbjct 378 AGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || || | | ||| | ||| | | || ||||| ||||| ||||| ||| | Sbjct 643 CCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGAC 702 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || || ||||| |||| | || | ||||| ||||| || || Sbjct 703 AAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGA 762 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| | || | |||| | || | ||||| | | || || Sbjct 763 ATACCCTCTTTGTCC-TGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAAC 821 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||| || | ||||| ||||| | || || |||||||||||||||| Sbjct 822 TTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCATGG 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496034094482880