Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2779 134 1e-26 seq1592 107 1e-18 seq121 96.9 2e-15 seq12857 89.7 4e-13 >seq2779 Length=20704 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || || ||||||||| ||| |||| | ||||| | ||| Sbjct 8400 ATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCAAGTTG 8459 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||| |||||| || || |||||||| || ||||| ||||| Sbjct 8460 TTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTT 8519 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| ||||||| ||||| | ||| || || | ||| |||||||| ||||| Sbjct 8520 GGCCTTCACATTTTCTATGGTATCTGAAGCTTCAACTTCAAGGGTGATGGTTTTGCCTGT 8579 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||| || ||||| Sbjct 8580 GAGAGTCTTTACAAAGATCTGCAT 8603 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || || ||||||||| ||| |||| | ||||| | || Sbjct 8628 ATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCCAGCTG 8687 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || || | |||| ||||| || || |||||| ||||||||||| ||| || Sbjct 8688 TTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGAATGCCTTCCTTGTCTTGAATCTT 8747 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | |||||||| || | |||||| || | ||| |||||||| || || Sbjct 8748 GGCTTTAACATTCTCTATAGTGTCAGAAGCTTCTACCTCAAGGGTGATGGTTTTCCCAGT 8807 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| || || |||||||| Sbjct 8808 GAGAGTTTTCACGAAGATTTGCAT 8831 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 |||||||| ||||| ||||| || ||||| || || |||||| ||| |||| | ||| Sbjct 8164 AAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCATCT 8223 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || || || || | || | ||| || || ||| ||||||||||| ||||| Sbjct 8224 TCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTGTCC 8283 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| |||||| | || || || || | ||| || || | ||||||||| Sbjct 8284 TGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATGGTT 8343 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| |||||||| ||||| || ||||| Sbjct 8344 TTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 >seq1592 Length=29089 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 ||||||||||| || || || || ||||| || ||||||||| || || || ||| Sbjct 202 AAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCG--GACAAGGTGCGTCCGT 259 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 | || | || ||||| ||| | ||||| | ||| || || || || ||||| |||| Sbjct 260 CCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGT 319 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||||||| ||| ||| | || || ||||| | ||||| || || ||||| | Sbjct 320 CTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAATAG 379 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || |||| ||||| || |||||||||||| Sbjct 380 TTTTTCCCGTCAAGGTTTTGACGAAAATTTGCATA 414 >seq121 Length=74473 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14981 TAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAG 15040 ||| | ||||||| ||||| ||||| |||| | | | ||||| | ||||| |||| Sbjct 8115 TAGTACCTTTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAG 8174 Query 15041 CGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTA 15100 | | || | ||||| || || ||||||||| || || || ||| ||| ||| | Sbjct 8175 CAAAGATAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCA 8234 Query 15101 CAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTT 15160 || |||| || ||||| |||||| || | |||||||||||||| || || |||| Sbjct 8235 CATTTTCGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTT 8294 Query 15161 TTACAAAAATTTGCAT 15176 | || ||||| ||||| Sbjct 8295 TGACGAAAATCTGCAT 8310 >seq12857 Length=4317 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/215 (69%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG----T 15022 ||||||||| | || || || || || || |||||||| |||| | ||| | Sbjct 4063 AACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATC----AGAAAGCGTGCGACCAT 4118 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | |||||| || || | ||||| | ||| || || || || |||||||| | Sbjct 4119 CTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGGATACCTTCCTTAT 4178 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||||||| ||| ||| | ||||| ||||| || || || || || |||| Sbjct 4179 CCTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGACTTCCAATGTGATGG 4238 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| || ||||| || || ||||| |||||| Sbjct 4239 TTTTACCGGTGAGAGTCTTGACGAAAATCTGCATA 4273 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||| || ||||| ||||| || || || ||||| ||| || || |||| || | Sbjct 3613 ATGTAGTGTAGATTCTTTCTGAATATTATAATC--TGACAAAGTACGTCCGTCCTCGAGC 3670 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || ||||| ||| | |||| | || || || ||||| || || ||||| |||| Sbjct 3671 TGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGAATGCCCTCTTTGTCTTGAATT 3730 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 || |||||| | || || ||||| | ||||| || || || || ||||| ||| Sbjct 3731 TTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACCTCCAAAGTGATAGTTTTTCCT 3790 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| |||||| || |||||||||||| Sbjct 3791 GTCAAAGTTTTGACGAAAATTTGCATA 3817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357231692265140