Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_011551.1 Length=39867 Score E Sequences producing significant alignments: (Bits) Value seq680 105 2e-18 >seq680 Length=42727 Score = 105 bits (116), Expect = 2e-18 Identities = 188/273 (69%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 33995 ACGCCTCCACCATAGCCTAAGCCGAGTTCCATCACCTTACCGATTTGCCGTT---GGTCT 34051 ||||| |||||||| |||||||| | |||||| ||||| ||||| || ||| |||| Sbjct 19204 ACGCCGCCACCATACCCTAAGCCCAATTCCATGACCTTGCCGATCTGACGTCCGAGGTCA 19263 Query 34052 TTGGTGACGTCCTCAGGTAAAAGATTAAACGCGCGCGCATAGGCGAGTTTATAGAGGTCA 34111 | ||| | || | | | || ||||| || |||||||| ||||| || ||||| Sbjct 19264 TCA---ACGGCATCGGCGGAGATGTTGAACGCACGAGCATAGGCCAGTTTGTAAAGGTCT 19320 Query 34112 TCGCCTTTGCCGTTATCAAACTCGCTAAAAGCCTTGACTTTCCAGTTTTCCCCCGCCAGC 34171 || |||| ||| | || | | || || | | ||||| ||||| || |||| Sbjct 19321 TCACCTTCGCCCCTGTCGTATGCTGCGAACGCTTCCAGCTTCCATTTTTCACCAGCCAAG 19380 Query 34172 CATGCCAGCATGCGGCCTTCGATATTCGACAAATCCGAGATAACCAGCTTTTTACCCGGT 34231 | |||||| ||| || ||||| |||||||| || | | || || ||||||||||| Sbjct 19381 AACGCCAGCCCGCGCCCCTCGATGTTCGACAAGTCGGCAACGACGAGTTTTTTACCCGGC 19440 Query 34232 GGTGCAATAATACACCCTCTTAGCGCGGAACTG 34264 | | || || || || | ||||||||| || Sbjct 19441 GTCGGGATGATGCAGCCGCGCAGCGCGGAAGTG 19473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127397097072392