Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_012223.2 Length=44899 Score E Sequences producing significant alignments: (Bits) Value seq680 185 2e-42 >seq680 Length=42727 Score = 185 bits (204), Expect = 2e-42 Identities = 462/700 (66%), Gaps = 34/700 (5%) Strand=Plus/Plus Query 743 TGCCGCACCAGGTTGAACTACTGCGGGACACGAAGACTAAAATCCTCGGCCTGTGTTCCG 802 ||||||||||| | || |||||| |||| | ||| ||||| ||||||||||| || | Sbjct 33339 TGCCGCACCAGTTCGACCTACTGGAAGACATCACGACGAAAATTCTCGGCCTGTGCTCGG 33398 Query 803 GCTTCGGTGGCGGCAAGTCATGGGTTGCCGCACGTAAGGTCATCCAGCTTCTGACACTTA 862 ||| || ||||| || | ||||| || | ||||| | |||||||| ||| | | Sbjct 33399 GCTATGGCGGCGGTAAAACTTGGGTCGCGGTGCGTAAAGCGATCCAGCTGATGATTTTGA 33458 Query 863 ACCCTGGTTATGACGGCATCGTGACCGAACCGACTATTCCACTCCTGGTTAAAA----TC 918 | || || | ||||| || | ||||||||||| ||||| ||||| | Sbjct 33459 ATCCGGGGTGCGACGGTATGATTACCGAACCGACGCACCCACT----GTTAACGCAGGTG 33514 Query 919 ATGTATCCGGAACTGGAGAAGGCATTCGACGAGGCTGGCTTCCGGTGGAAGTTCAATAAG 978 | ||||| ||||| || | ||| | || ||| ||| | || | ||||| || ||| Sbjct 33515 CTTTATCCCGAACTTGAAACGGCGCTTGATGAGTACGGCATTCGATACAAGTTTAACAAG 33574 Query 979 CAGGACAAGATCTACAACGTGCTGGT----------GAAAG------GCAAATGG---AC 1019 ||| ||||| | | |||||||| |||| |||| | || Sbjct 33575 GTGGAGAAGATTTTTA-CGTGCTGGGTTTGGGATGAGAAAATCCAGCGCAACCGCCGCAC 33633 Query 1020 TCGCGTTATCTGTGAATCAATGGAGAACTATACCCGCCTGATCGGGGTCAACGCCGCATG 1079 || | ||||||| ||| ||||| ||||||| ||| | |||| || |||||||| || Sbjct 33634 ACGTATCATCTGTGCATCGATGGAAAACTATAAACGCTTAGTCGGTGTTAACGCCGCGTG 33693 Query 1080 GATTGTTGCCGACGAGTTCGACACCACGAAACAAGACGTCGCA---ATGGCGGCATACCA 1136 | ||| ||||||||||||||| || | ||||||||| |||||| | | Sbjct 33694 GTGTGTGATGGACGAGTTCGACACCTCGGCGGAGGACGTCGCATATATGGCG---TTCGT 33750 Query 1137 CAAATTGCTCGGTCGTCTGCGTGCGGGCTTCGTCCGCCAGTTTGTCATCGTGTCCACGCC 1196 ||| |||| |||||||||||| || || |||||| | | || |||||||| || Sbjct 33751 GAAACTGCTGGGTCGTCTGCGTCGCGGTAAAGTGCGCCAGATGATTATTGTGTCCACACC 33810 Query 1197 GGAAGGCTACCGGGCGATGTATCAAATTTTCGAGGTGGAGAAGGGTAGCCAGAAGCGCCT 1256 ||||| | ||| |||||||| | || |||| ||| || |||||| || Sbjct 33811 TGAAGGTTTCCGCGCGATGTACCGCATCTTCGTCACTGAGTTGGACGAGATGAAGCGGCT 33870 Query 1257 GATCCGGGCGAAGACCACGGACAACCACCATTTACCGGCAGACTTTATCGACACGCTGCG 1316 ||| |||||||| ||||||| ||| | |||| ||||| |||| | ||||| Sbjct 33871 TATCAAAGCGAAGACGCGCGACAACCCGCATCTGCCGGAAGACTATATCAAGACGCTCGA 33930 Query 1317 CAGTCAGTACCCGGCTAACCTGATTGATGCGTACCTGAACGGCCTGTTTGTTAACCTTAC 1376 | || ||| || | || | || |||||||| |||||| ||| || ||| | || Sbjct 33931 AAAACAATACTCGAAAGAGTTGGTAGAGGCGTACCTAAACGGCGAGTTCGTCAACATGAC 33990 Query 1377 GTCGGGCGCGGTGTACAAGATGTTCAACCGCGAGGGGAAC 1416 | |||| | ||| | | |||| ||||| || |||| Sbjct 33991 GGCGGGTATCATTTACCATACGTTCGACCGCAAGCTGAAC 34030 Score = 84.2 bits (92), Expect = 6e-12 Identities = 90/115 (78%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 31302 ACTTCAGCCATCGCGTAAAGGTCGAGGCCCAGGTTT---TTAGCGAACTGCAAGAACGCC 31358 || || |||| |||||| |||||||||| ||| || |||||||||| |||||| Sbjct 19144 ACGTCGGCCAGCGCGTACAGGTCGAGGC---GGTACACCTTCGCGAACTGCATGAACGCG 19200 Query 31359 GCCACGCCGCCACCATAGCCCAGGCCCAATTCGCACG-CCTTACCGATCTGGCGT 31412 | |||||||||||||| || | ||||||||| || | |||| |||||||| ||| Sbjct 19201 CCGACGCCGCCACCATACCCTAAGCCCAATTC-CATGACCTTGCCGATCTGACGT 19254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143492459558728